DRSC/TRiP Functional Genomics Resources

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Protein Alignment Dscam4 and dscama

DIOPT Version :9

Sequence 1:NP_001261571.1 Gene:Dscam4 / 2769008 FlyBaseID:FBgn0263219 Length:1935 Species:Drosophila melanogaster
Sequence 2:XP_021334866.1 Gene:dscama / 568643 ZFINID:ZDB-GENE-050310-7 Length:2025 Species:Danio rerio


Alignment Length:2006 Identity:611/2006 - (30%)
Similarity:933/2006 - (46%) Gaps:257/2006 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 DLHSLFKAILILYVIRAETSQFVNGLDLQGPIFLHEPPHRVEFSNNSGGLIECSGHGSPPPEVEW 66
            ||||      .||.:.|...:.|                   |::.:|.|:.|.....||..:.|
Zfish    19 DLHS------SLYFVNASLQEVV-------------------FASTTGTLVPCPAAAVPPATLRW 58

  Fly    67 ----------TP----IPPQQDMVFQLSNGSMMFYPFTAEKYRHEVHATVYRCKLRNLVGTVLSR 117
                      .|    :.|         ||::..:.|....:...:|...|.|...|..|.:.|:
Zfish    59 YLATGEESYNVPGIRHVHP---------NGTLQIFHFPPSSFSKVIHDNTYYCTAENPSGKIRSQ 114

  Fly   118 EVHVRGVVNQKYAVQVHDEYVMTGNTAVLKCQVPSYMSEFVLVTAWVQDTGMHLYPNTDIGGKYT 182
            :||::.|:.:.|.|:|.|:..|.|:.||.||.:||.:..::.|.:|.:||    .|... |.::.
Zfish   115 DVHIKAVLREPYTVRVADQTAMRGSVAVFKCIIPSSVENYITVVSWERDT----VPLVS-GARFL 174

  Fly   183 VLSNGELYINNAGPNDAYKSYTCRTVNRLTGEVQISTYPGRIIVTEPKGMVQPRINVEKHSMRHV 247
            :.|.|.|||.:....|...:|.|.|.:|.|.|.:.|......:..:|.... |.| ::....|.|
Zfish   175 ITSTGALYILDVQKEDELFNYRCMTRHRYTSETRQSNSARLFVPADPSNSA-PAI-LDGFEKREV 237

  Fly   248 VLNGQTTLPCIAQGHPVPTYRWFKEENEQLLPLQLSERITIVSAGLLKITKARLEDSGKYLCWVN 312
            :.:.:..|||.|.|||.|.|||.|...    ||:...|......||| |.:|:..|:|.|:|.|.
Zfish   238 MASHRVELPCKASGHPAPKYRWLKNNR----PLESDSRFRQSVTGLL-IERAQPSDTGSYVCEVW 297

  Fly   313 NTAGEETIQVSLTVTAPLTAHLQPQVQTVDVDKDAQFQCIVSGHPVHDVNWLHDGKPI-----LR 372
            |:.|...:...|||..||.|.:.|:.....|.......|.|:|....:::|..:|..|     :|
Zfish   298 NSYGNAEVIGRLTVKEPLKAVVSPRKVKGSVGSQVSLSCSVTGSDEFELSWYRNGDKINTGANIR 362

  Fly   373 DNRVEILTDPPRLIIKKVQKEDPGMYQCFVSNEWEQIQSTAELQLGDASPELLYWFSEQTLQPGP 437
            .|.:    :...|::..:.|.|.|:||||........|...::.|.|.:|::|..|||:.:.|..
Zfish   363 MNGI----NKENLVMDGMAKSDGGVYQCFSRKAKMSAQDFVQVILEDGTPKILSAFSEKVVGPND 423

  Fly   438 TVSLKCVATGNPLPQFTWSLDGFPIPDSSRFLVGQYVTIHDDVISHVNISNVKEEDGGEYTCTAQ 502
            .|||.|...|.|.|..||:||...:...||..:...:|...:|:|::|||:::..|.|.|.||..
Zfish   424 FVSLTCHVKGTPQPAITWTLDDEVVAKDSRHRIVHSITAEGNVVSYLNISHIQVRDSGVYRCTCN 488

  Fly   503 NAIGKVSHSAKVNIYGLPYIREMPKITGISGSDLIVKCPVAGYPIDKIHWERDGQTLPINRRQRA 567
            |:.|.||:.|::|:.|...||.|..:|.|:|.|:.:.|.|.|||...|.|.::...||.|.||||
Zfish   489 NSAGTVSYQARINVRGSADIRPMKNLTAIAGWDMYIHCHVIGYPYYSIKWFKNSNLLPFNDRQRA 553

  Fly   568 Y-NNGTLIIEQLQRLEDAGTYTCMAQNKQKQTSRRNVEIQVLVPPKIMPIQAMTNMLREGMRAAI 631
            : |||||.:..:|:..|.|.|:|..|.:.:....::|.:.|.|||.|.|.:.....:  |.|..:
Zfish   554 FENNGTLKLLNVQKELDEGEYSCHVQVQPQLFKNQSVHVTVKVPPFIQPFEFPRYSI--GHRVFV 616

  Fly   632 SCQILEGDLPVSFRWERNGKPLIGTGNEVFRRLDEYSASLVIEHISSDHSGNYTCIASNVAGTER 696
            .|.:..||||:|..||::||.:..:.......:| :::||.|.::...|:|.|||||.|.|...:
Zfish   617 PCVVRSGDLPISITWEKDGKSINASLGVTIDNID-FTSSLRISNLQRVHNGTYTCIAQNDAAVVK 680

  Fly   697 FTVPLTVNVPPKWILEPKDSSAQAGADVLLHCQSSGYPTPTITWKKAIGPTPGEYKDFLYEP--T 759
            :...|.|.|||::.::|:|.....|..|:|:|.:.|.|.|||.||.:.|....:::......  .
Zfish   681 YQSQLIVRVPPRFKVQPQDQDGIYGKSVILNCSADGEPRPTIEWKYSKGAGVPQFQPIALNSGFR 745

  Fly   760 VQLFPNGTIFFKKISKESQGHFLCEAKNNIGSGVSKVIFLKVNVPAHFQTKTKQISVAKGKQVHV 824
            |||..||::..|.:.:|..|::||:..|::|:.|||.::|.|.:||...:........||:::.:
Zfish   746 VQLLGNGSLLIKHVLEEDAGYYLCKVSNDVGADVSKSMYLNVKIPAMITSYPNNSLATKGEKIEM 810

  Fly   825 QCNVQGDNPIDFKWKIQATQQYLDESLDS---RYTIRDQVLDDGMVSELGISHTYRQDTGIYICQ 886
            .|...|:.||..:|:.:..::.....::.   |:|:..:.:.|.:||.|.|..|.|:|:|.:.|.
Zfish   811 SCKAHGEKPIMVRWEKEVEKEKQSHMINPDMWRHTVTVKNVGDEVVSTLQIYPTMREDSGFFSCH 875

  Fly   887 ASNAFGQDEMSIQLIVQEVPEQPKNLRINSQQSRSLQLTWSQPFAGNSPIEEYHIYYKQISDIWQ 951
            |.|::|:|...:||.|||.||.|| :.|...:.|::.|.|:..|.|||.|..|.|..|..::.|:
Zfish   876 AINSYGEDRGILQLTVQEPPEPPK-VEIREVKERTIALRWTMGFDGNSLITGYDIECKNKTETWE 939

  Fly   952 NAEHL-TIAGAQTVINIQQLRPAKAYHIRMSAENKLGASEFSEVVQVTTLEEVPSGPPLAVRAEP 1015
            .|... .::.......|.:|.|:..|:|||.|:|.:|.||.|..:.|||.|..|.|||..|..|.
Zfish   940 RARRTRDVSPTLNQATIIELHPSSTYNIRMFAKNHIGDSEPSNELTVTTDEADPEGPPQDVTLEA 1004

  Fly  1016 KSSTEIFVTWDAPERDHWNGILLGYYVGYQMSLTPEDKEVNPTQGFSFKTVEVRSHFGGET---V 1077
            .:|..|.|||.||.:...||::.||.|.::      :...|.:..|...:||..    |||   .
Zfish  1005 ITSQSIKVTWKAPLKHLQNGVIRGYQVCHR------EHSTNGSHQFVCISVEAT----GETESLS 1059

  Fly  1078 LANLNKFTQYHVIVQAYTSQGSGPPSKEIAVQTMEDVPSSPPESPQCDVLGSTSIYITWSPPDID 1142
            |.||.||.:|.|:|||..|.|.||.|.|:...|||||||..||..........||.::|..|..:
Zfish  1060 LNNLKKFAEYEVVVQASNSAGPGPASSEVRATTMEDVPSRAPEKVVATAASPESISLSWQTPARE 1124

  Fly  1143 GQNGKIKGYKVFY---ISVDELYETDPEVVKSTNQY---VTIENLRKYTNYTVWVLAYTKVGDGM 1201
            ..||.::|:::.|   :...||.|     :::...:   :.:|.|.|||||::.|||:|:.|||:
Zfish  1125 ALNGVLQGFRIIYWANLPDGELGE-----IRNVTTHKAPLELEGLEKYTNYSIQVLAFTRAGDGV 1184

  Fly  1202 KTKPFYCRTHEDVPSAPQAIKAIPASSSKIIISWLPPDLPNGDITGYTFY--------MSMLEGG 1258
            ::...|.||.||||..|..:||..||||.:.:|||||...||.|..||.:        :|..|..
Zfish  1185 RSDQIYIRTKEDVPGPPGGVKAAAASSSVVYVSWLPPLKLNGVIRKYTVFCSSTSPTVVSEFEVA 1249

  Fly  1259 REEGTHKRLLGPFVEMHETVRTQESATYQFWLTASTKMGEGEKTQVVTVPPNNKVPARIVSFSQR 1323
            .:|..|:        :|...|.::   |..|:.|.|..|.|..:.|:||.|..|.||:|::||..
Zfish  1250 PDEFLHR--------VHNLSRNRK---YNIWVMAVTAAGRGNSSDVITVEPLAKAPAKILTFSGT 1303

  Fly  1324 IVTPWKEHLELPCRKVGAPAPVTIWRQDGHNMETS---ARKTIAKNGTLYMKECQASDAGNYTCS 1385
            :.|||...:.||||.||.|.|...|.::..:...:   .|::|..||:..:|..:|.|:|.|||.
Zfish  1304 VTTPWMRDVVLPCRAVGDPPPAIKWLKESGSPAPAVIDGRRSIHGNGSFIIKTVKAEDSGYYTCV 1368

  Fly  1386 VENTWGKDEIVYNIVVKVPPEAPNLTVINAYTDSLLLEWMDNSHGGSPILGYVINYKRDNGD-WE 1449
            ..|.:|.|||:.|:.|:|||:.|.|||....|.|:.:.|....:|||.|.||::.|..||.: |.
Zfish  1369 ASNNYGTDEIILNLQVQVPPDQPRLTVTKTTTTSITVTWTPGDNGGSSIRGYILQYSEDNSEKWG 1433

  Fly  1450 ELQVDSKTTSHLLTNLWCGTRYQLYITAYNKIGTGLPCDIVNSYTKGNPPVQPKHSQMITN-NST 1513
            .:.:.....|:.|.||.|||.|:..:||.|.:|.|...:|:.:.|.|..|...|..::.|: |.|
Zfish  1434 SISISPSERSYRLENLNCGTWYKFTLTAQNAVGPGRISEIIEAKTHGKEPQFSKEQELFTSINGT 1498

  Fly  1514 SVTCWLDSWGDGGCGILYFMIESRVYGRSSWAVVSNHIPPTERIYTVSDLVPGTKYQLKVTAHNN 1578
            ||...|..|.||||.|..|.:|.|......|.....  ....:.|.:.||...|.|:|::..:|:
Zfish  1499 SVKLNLIGWNDGGCPITSFTLEYRPLESPVWTKAKR--TSLSKSYNLLDLQEATWYELQMKVYNS 1561

  Fly  1579 AGSTTAIYNFTTLSTQGVIYNNDHST-----------PVSHLSDLPFYANFKLLLPICFSLLMLL 1632
            ||.......|.|||..|       ||           ||...|:    ...|:::.|...|:.::
Zfish  1562 AGLAEKRVKFATLSYDG-------STIPPLVKTLVKDPVKKTSN----EGMKMMVTISCILVGMV 1615

  Fly  1633 ALIGAALFLRKR-------KLASQARLASSSMSESPSLANLQNKQN----------RDQQYLAVR 1680
            .|....:.||:|       :|.....||...||::...::..|||.          |.|..:..|
Zfish  1616 LLFVLLMVLRRRRREQRLKRLRDAKSLAEMLMSKNTRPSDTMNKQQQTLRMHIDIPRAQLLIEER 1680

  Fly  1681 CNPGTSAPRGS---NSNDSGSFGKAEGNEYIEDICPYATFQLNKQTYSESSYSGNVYSGPYHSVR 1742
            ....|...|.:   ..||.|...|.:.        ...|..::.|:.|::       :||...| 
Zfish  1681 DTMETVDDRSTVLLTDNDFGETAKQKS--------ATVTHSVHYQSLSQA-------TGPLVDV- 1729

  Fly  1743 GSFVYHDVKPESYHSKEPEYTKVR-RKVG-----------RLRDPH------------------- 1776
                 .||:|.:..|.....|..| .|.|           .|..||                   
Zfish  1730 -----SDVRPGTSKSSLSNPTSRRTAKAGPAARNRYASQWTLNRPHPPVSVHTLSTDWRLGTPRV 1789

  Fly  1777 --SESQESD----NPG-STDSEVRKILTLHIPITEYDTLGSESDNDVSARALNSAKY-------- 1826
              |..:|||    :|. .||.....:::.....:.|:.|....::......|..||:        
Zfish  1790 AGSVDKESDSYSVSPSQDTDRARSSMVSTESASSTYEELARAYEHAKMEEQLRHAKFTITECFIS 1854

  Fly  1827 -----RAQRDTQDETSSSSETTP--TSMTR-KSKPP----------FAARKGGKPG 1864
                 :....|.|.|.|.:.:||  :.:.| .:.||          .|..|..:||
Zfish  1855 DTSSEQMTAGTNDYTDSLTSSTPSESGICRFTASPPKPQDVCRVINMAVPKAHRPG 1910

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Dscam4NP_001261571.1 Ig 31..124 CDD:416386 20/106 (19%)
Ig strand A 32..35 CDD:409353 0/2 (0%)
Ig strand A' 41..45 CDD:409353 0/3 (0%)
Ig strand B 48..57 CDD:409353 3/8 (38%)
Ig strand D 75..78 CDD:409353 0/2 (0%)
Ig strand E 83..88 CDD:409353 0/4 (0%)
Ig strand F 101..109 CDD:409353 2/7 (29%)
Ig strand G 112..124 CDD:409353 4/11 (36%)
Ig 235..326 CDD:416386 32/90 (36%)
Ig strand A 235..238 CDD:409353 1/2 (50%)
Ig strand A' 244..248 CDD:409353 1/3 (33%)
Ig strand B 251..258 CDD:409353 2/6 (33%)
Ig strand C 266..271 CDD:409353 3/4 (75%)
Ig strand C' 276..279 CDD:409353 0/2 (0%)
Ig strand D 285..289 CDD:409353 1/3 (33%)
Ig strand E 292..298 CDD:409353 4/5 (80%)
Ig strand F 305..313 CDD:409353 4/7 (57%)
Ig strand G 316..326 CDD:409353 2/9 (22%)
IgC2_3_Dscam 329..417 CDD:409549 22/92 (24%)
Ig strand B 347..351 CDD:409549 0/3 (0%)
Ig strand C 360..364 CDD:409549 0/3 (0%)
Ig strand E 383..387 CDD:409549 1/3 (33%)
Ig strand F 397..402 CDD:409549 3/4 (75%)
Ig strand G 410..413 CDD:409549 1/2 (50%)
IgI_4_Dscam 422..516 CDD:409548 35/93 (38%)
Ig strand B 439..443 CDD:409548 3/3 (100%)
Ig strand C 452..456 CDD:409548 1/3 (33%)
Ig strand E 482..486 CDD:409548 1/3 (33%)
Ig strand F 496..501 CDD:409548 2/4 (50%)
Ig strand G 509..512 CDD:409548 1/2 (50%)
IgI_5_Dscam 520..607 CDD:409550 33/87 (38%)
Ig strand B 536..540 CDD:409550 0/3 (0%)
Ig strand C 549..553 CDD:409550 1/3 (33%)
Ig strand E 571..575 CDD:409550 3/3 (100%)
Ig strand F 586..591 CDD:409550 2/4 (50%)
Ig strand G 600..603 CDD:409550 0/2 (0%)
Ig 610..703 CDD:416386 30/92 (33%)
Ig strand A 611..613 CDD:409353 1/1 (100%)
Ig strand A' 620..624 CDD:409353 0/3 (0%)
Ig strand B 627..636 CDD:409353 2/8 (25%)
Ig strand C 641..648 CDD:409353 3/6 (50%)
Ig strand C' 650..652 CDD:409353 1/1 (100%)
Ig strand D 659..664 CDD:409353 0/4 (0%)
Ig strand E 668..675 CDD:409353 3/6 (50%)
Ig strand F 682..690 CDD:409353 6/7 (86%)
Ig strand G 693..702 CDD:409353 0/8 (0%)
IgI_7_Dscam 706..801 CDD:409546 32/96 (33%)
Ig strand B 724..728 CDD:409546 2/3 (67%)
Ig strand C 737..741 CDD:409546 2/3 (67%)
Ig strand E 766..770 CDD:409546 1/3 (33%)
Ig strand F 780..785 CDD:409546 2/4 (50%)
Ig strand G 794..797 CDD:409546 2/2 (100%)
Ig 818..904 CDD:416386 26/88 (30%)
putative Ig strand B 820..827 CDD:409353 0/6 (0%)
putative Ig strand C 835..841 CDD:409353 1/5 (20%)
putative Ig strand C' 853..856 CDD:409353 1/5 (20%)
putative Ig strand D 862..866 CDD:409353 1/3 (33%)
putative Ig strand E 868..874 CDD:409353 3/5 (60%)
putative Ig strand F 881..889 CDD:409353 3/7 (43%)
putative Ig strand G 892..902 CDD:409353 4/9 (44%)
FN3 906..999 CDD:238020 32/93 (34%)
FN3 1006..1110 CDD:238020 40/106 (38%)
fn3 1117..1203 CDD:394996 27/91 (30%)
FN3 1215..1307 CDD:238020 31/99 (31%)
Ig <1334..1401 CDD:416386 26/69 (38%)
Ig strand C 1345..1349 CDD:409353 0/3 (0%)
Ig strand D 1363..1366 CDD:409353 1/2 (50%)
Ig strand E 1367..1372 CDD:409353 1/4 (25%)
Ig strand F 1380..1388 CDD:409353 4/7 (57%)
Ig strand G 1394..1401 CDD:409353 3/6 (50%)
FN3 1405..1494 CDD:238020 32/89 (36%)
FN3 1499..1580 CDD:238020 25/81 (31%)
dscamaXP_021334866.1 Ig 124..217 CDD:325142 31/97 (32%)
I-set 236..311 CDD:254352 29/79 (37%)
IG_like 321..402 CDD:214653 19/84 (23%)
I-set 408..502 CDD:333254 35/93 (38%)
IGc2 524..579 CDD:197706 24/54 (44%)
Ig 614..679 CDD:319273 23/65 (35%)
Ig_DSCAM 708..787 CDD:143211 27/78 (35%)
Ig 805..898 CDD:325142 29/92 (32%)
FN3 894..988 CDD:238020 32/94 (34%)
FN3 995..1092 CDD:238020 40/106 (38%)
fn3 1100..1186 CDD:306538 27/90 (30%)
fn3 1199..1282 CDD:306538 29/93 (31%)
Ig 1312..1377 CDD:319273 22/64 (34%)
fn3 1405..1471 CDD:306538 24/65 (37%)
FN3 1492..1563 CDD:238020 23/72 (32%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 135 1.000 Domainoid score I4915
eggNOG 1 0.900 - - E1_KOG3510
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H74393
Inparanoid 1 1.050 917 1.000 Inparanoid score I353
OMA 1 1.010 - - QHG47134
OrthoDB 1 1.010 - - D10185at33208
OrthoFinder 1 1.000 - - FOG0003568
OrthoInspector 1 1.000 - - mtm6394
orthoMCL 1 0.900 - - OOG6_101656
Panther 1 1.100 - - O PTHR10075
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4969
SonicParanoid 1 1.000 - - X1391
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
1615.870

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