DRSC/TRiP Functional Genomics Resources

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Protein Alignment Dscam4 and Igdcc4

DIOPT Version :10

Sequence 1:NP_001261571.1 Gene:Dscam4 / 2769008 FlyBaseID:FBgn0263219 Length:1935 Species:Drosophila melanogaster
Sequence 2:XP_006511369.1 Gene:Igdcc4 / 56741 MGIID:1858497 Length:1312 Species:Mus musculus


Alignment Length:1644 Identity:329/1644 - (20%)
Similarity:513/1644 - (31%) Gaps:591/1644 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly   406 WE---QIQSTAELQLGDASPELLYWFSEQTLQPGPTVSLKC----VATGNPLPQFTWSLDGFPIP 463
            ||   ..::|.:|...:...:::       |.|...|.|.|    .|.|.| .:.|||.||    
Mouse    74 WELPLPQETTVKLSCDEGPLQVI-------LGPEQAVVLDCTLGATAAGPP-TRVTWSKDG---- 126

  Fly   464 DSSRFLVGQYVTIHDDVISHVNI-----------SNVKEEDG-------------GEYTCTAQNA 504
                          |.|:.|.|:           |.:::||.             |.|:|.|.:.
Mouse   127 --------------DTVLEHENLHLLPNGSLWLSSPLEQEDSDDEEALRIWKVTEGSYSCLAHSP 177

  Fly   505 IGKV-SHSAKVNIYGLPYIREMPKITGISGSDLI-------VKCPVAGYPIDKIHWERDGQTLPI 561
            :|.| |..|.|.:..|......|:      |.::       .:|...|.|...|.||:|..|:|.
Mouse   178 LGVVASQVAVVKLATLEDFSLHPE------SQIVEENGTARFECHTKGLPAPIITWEKDQVTVPE 236

  Fly   562 NRRQRAYNNGTLIIEQLQRLEDAGTYTCMAQNKQKQ----------------TSRRNVEIQVLVP 610
            ..|.....||.|.|..:|. .|||:|.|:|.|..:|                .:.|..::.::..
Mouse   237 ESRLITLPNGVLQILDVQD-SDAGSYRCVATNSARQRFSQEASLTVALRGSLEATRGQDVVIVAA 300

  Fly   611 PKIMPIQAMTNMLREGMRAAISCQILEGDLPVSF-RWER-NGKPLIGTGNEVFRRLDEYSASLVI 673
            |:       ...:..|....:.| :...| |..| .|.| :||| |.|...|..|     .:|:|
Mouse   301 PE-------NTTVVSGQSVVMEC-VASAD-PTPFVSWVRQDGKP-ISTDVIVLGR-----TNLLI 350

  Fly   674 EHISSDHSGNYTCIASNVAGTERF---TVPLTVNVPPKWILEPKDSSAQAGADVLLHCQSSGYPT 735
            ......|||.|.|.| |...|..|   ...|.|...|.....|:..|....:.....|::||.|.
Mouse   351 ASAQPRHSGVYVCRA-NKPRTRDFATAAAELRVLAAPAISQAPEALSRTRASTARFVCRASGEPR 414

  Fly   736 PTITWKKAIGPTPGEYKDFLYEPTVQLFPNGTIFFKKISKESQGHFLCEAKNNIGSGVSKVIFLK 800
            |.:.|              |:: .:.|.|||.:   |:.               |.|.|.||   
Mouse   415 PALHW--------------LHD-GIPLRPNGRV---KVQ---------------GGGGSLVI--- 443

  Fly   801 VNVPAHFQTKTKQISVAKGKQVHVQCNVQGDNPIDFKWKIQATQQYLDESLDSRYTIRDQVLDDG 865
                                                                             
Mouse   444 ----------------------------------------------------------------- 443

  Fly   866 MVSELGISHTYRQDTGIYICQASNAFGQDEMSIQLIVQEVPEQPKNLRINSQQSRSLQLTWSQPF 930
              :::|:     ||.|.|.|.|.|                                         
Mouse   444 --TQIGL-----QDAGYYQCVAEN----------------------------------------- 460

  Fly   931 AGNSPIEEYHIYYKQISDIWQNAEHLTIAGAQTVINIQQLRPAKAYHIRMSAENKLGASEFSEVV 995
                                                              ||.....|:..:.||
Mouse   461 --------------------------------------------------SAGTACAAAPLAVVV 475

  Fly   996 QVTTLEEVPSGPPLAVRAEPKSSTEIFVTWDAPERDHWNGILLGYYVGYQMSLTPEDKEVNPTQG 1060
            :    |.:||. |..|.|.|.||:.:.|.|:.||. |...| :|:.:.||.:...::.|......
Mouse   476 R----EGLPSA-PTRVTATPLSSSSVLVAWERPEL-HSEQI-IGFSLHYQKARGVDNVEYQFAVN 533

  Fly  1061 FSFKTVEVRSHFGGETVLANLNKFTQYHVIVQAYTSQGSGPPSKEIAVQTMEDVPSSPPE----S 1121
            .....::||          :|...|.|...|.||:..|:...|....|.|::||||:.|:    |
Mouse   534 NDTTELQVR----------DLEPNTDYEFYVVAYSQLGASRTSSPALVHTLDDVPSAAPQLTLSS 588

  Fly  1122 PQCDVLGSTSIYITWSPPDIDGQNGKIKGYKVFY---ISVDELYETDPEVVKSTNQYVTIENLRK 1183
            |     ..:.|.:.|.|......||::..||:.|   ...|:::.|:   |......:|:.:|:.
Mouse   589 P-----NPSDIRVAWLPLPSSLSNGQVLKYKIEYGLGKEEDQVFSTE---VPGNETQLTLNSLQP 645

  Fly  1184 YTNYTVWVLAYTKVGDGMKTKPFYCRT-----HEDVPSAPQAIKAIPASSSKIIISWLPPDLPNG 1243
            ...|.|.:.|.|..|.|:.::....||     ...||.||..:| :.|....:::||.||..|. 
Mouse   646 NKVYRVRISAGTGAGYGVPSQWMQHRTPGVHNQSHVPFAPAELK-VRAKMESLVVSWQPPPHPT- 708

  Fly  1244 DITGYTFYMSMLEGGREEGTHKRLLGPFVEMHETVRTQESATYQFW----LTASTKMGEGEKTQV 1304
            .|:||..|.      ||.||.:...|.        |.......|.|    :....|:.:.|.||:
Mouse   709 QISGYKLYW------REVGTEEEADGD--------RPPGGRGDQAWDVGPVRLKKKVKQYELTQL 759

  Fly  1305 VTVPPNNKVPARIVSFSQR---IVTPWKEHLE------LPCRKVGAPAPVTIWRQDGHNMETSAR 1360
            |   |......::|:|::.   ....||...|      ||.:: |.|.|                
Mouse   760 V---PGRLYEVKLVAFNKHEDGYAAVWKGKTEKAPTPDLPIQR-GPPLP---------------- 804

  Fly  1361 KTIAKNGTLYMKECQASDAGNYTCSVENTWGKDEI----VYNIVVKVPP-EAPNLTVINAYTDSL 1420
                        ........|.:.|:...|.|.:.    :.|..|:..| ...|.:::..||   
Mouse   805 ------------PAHVHAESNSSTSIWLRWKKPDFTTVKIVNYTVRFGPWGLRNASLVTYYT--- 854

  Fly  1421 LLEWMDNSHGGSPILGYVINYKRDNGDWEELQVDSKTTSHLLTNLWCGTRYQLYITAYNKIGTGL 1485
                       |||       .......|::         |:..|...|:|:..:.::.....|.
Mouse   855 -----------SPI-------PSPGSSGEDI---------LIGGLKPFTKYEFAVQSHGVDMDGP 892

  Fly  1486 PCDIVNSYTKGNPPVQPKHSQMIT--NNSTSVTCWLDSWGDGGCGILYFMIESRVYGRSSWAVVS 1548
            ...:|...|..:.|..|.....::  ..||....|.......|..:.|.::.|           :
Mouse   893 FGSVVERSTLPDRPSTPPSDLRLSPLTPSTVRLHWCPPTEPNGEIVEYLILYS-----------N 946

  Fly  1549 NHIPP--------TE-RIYT--VSDLVPGTKYQLKVTAHNNAGSTTAIYNFTTLSTQGVIYNNDH 1602
            ||..|        || .|::  |..|...|:|..|:.|....|...    |:.|  |.||     
Mouse   947 NHTQPEHQWTLLTTEGNIFSAEVHGLESDTRYFFKMGARTEVGPGP----FSRL--QDVI----- 1000

  Fly  1603 STPVSHLSD-LPFYANFKLLLPICFSLLMLLALIGAALFLRKRK----------------LASQA 1650
             |.....|| |..:|...:::.:|..||.|||.:.|.|.....:                |.::|
Mouse  1001 -TLQKTFSDSLDVHAVTGIIVGVCLGLLCLLACMCAGLRRSSHREALPGLSSSGTPGNPALYTRA 1064

  Fly  1651 RLASSSMSESPSLANLQNKQNRDQQYLAVRCNPGTSAPRGSNSND--------SGSFGKAEGNEY 1707
            ||...|:..:..|.:|            |...|...:|..|:..|        .||.....|:  
Mouse  1065 RLGPPSVPAAHELESL------------VHPRPQDWSPPPSDVEDKAEVHSLMGGSVSDCRGH-- 1115

  Fly  1708 IEDICPYATFQLNKQTYSESSYSGNVYSGPYHSV---RGSFVYHDVKPESYHSKEPEYTKVRRKV 1769
                        :|:..|.:...|..::|.:...   :||            ...|..|:.    
Mouse  1116 ------------SKRKISWAQAGGPNWAGSWAGCELPQGS------------GPRPALTRA---- 1152

  Fly  1770 GRLRDPHSESQESDNPGSTDSEVRKILTLHIPITEYDTLGSES--------DNDVSARALNSAKY 1826
              |..|....|                ||.:....||.:.|..        .|.|.|..:..:.:
Mouse  1153 --LLPPAGTGQ----------------TLLLQALVYDAIKSNGRKKPSPACRNQVEAEVIVHSDF 1199

  Fly  1827 RAQR--------DTQDETSSSSETTPT---SMTRKSKPPFAARK--GGKPGTSGKRHV-----RS 1873
            .|.:        |.:.|...::||.|:   ::.......:..|:  |.:|.|||...:     .:
Mouse  1200 GASKGCPDLHLQDLEPEEPLTAETLPSTSGAVDLSQGADWLGRELGGCQPTTSGPERLTCLPEAA 1264

  Fly  1874 SSGYSSHNEETTFSISNYP 1892
            |:..|..:.:.:.:|...|
Mouse  1265 SASCSCSDLQPSTAIEEAP 1283

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Dscam4NP_001261571.1 Ig 31..124 CDD:472250
Ig strand B 50..54 CDD:409353
Ig strand C 63..66 CDD:409353
Ig strand E 82..86 CDD:409353
Ig strand F 102..107 CDD:409353
Ig strand G 115..119 CDD:409353
Ig 235..326 CDD:472250
Ig strand B 253..257 CDD:409353
Ig strand C 266..270 CDD:409353
Ig strand E 292..296 CDD:409353
Ig strand F 306..311 CDD:409353
Ig strand G 319..322 CDD:409353
IgC2_3_Dscam 329..417 CDD:409549 4/13 (31%)
Ig strand A 330..335 CDD:409549
Ig strand A' 338..342 CDD:409549
Ig strand B 345..355 CDD:409549
Ig strand C 360..366 CDD:409549
Ig strand C' 367..370 CDD:409549
Ig strand E 383..389 CDD:409549
Ig strand F 396..404 CDD:409549
Ig strand G 407..417 CDD:409549 3/12 (25%)
IgI_4_Dscam 422..516 CDD:409548 29/122 (24%)
Ig strand A' 430..434 CDD:409548 0/3 (0%)
Ig strand B 437..446 CDD:409548 3/12 (25%)
Ig strand C 451..457 CDD:409548 2/5 (40%)
Ig strand C' 459..462 CDD:409548 1/2 (50%)
Ig strand D 467..475 CDD:409548 0/7 (0%)
Ig strand E 479..488 CDD:409548 3/19 (16%)
Ig strand F 495..503 CDD:409548 4/7 (57%)
Ig strand G 506..516 CDD:409548 5/10 (50%)
IgI_5_Dscam 520..607 CDD:409550 26/109 (24%)
Ig strand A 520..522 CDD:409550 0/1 (0%)
Ig strand A' 527..531 CDD:409550 0/3 (0%)
Ig strand B 534..541 CDD:409550 1/13 (8%)
Ig strand C 548..554 CDD:409550 2/5 (40%)
Ig strand C' 555..557 CDD:409550 1/1 (100%)
Ig strand D 564..568 CDD:409550 1/3 (33%)
Ig strand E 571..577 CDD:409550 3/5 (60%)
Ig strand F 585..593 CDD:409550 4/7 (57%)
Ig strand G 597..607 CDD:409550 2/25 (8%)
Ig 610..703 CDD:472250 27/97 (28%)
Ig strand B 629..633 CDD:409353 0/3 (0%)
Ig strand C 643..647 CDD:409353 1/4 (25%)
Ig strand E 669..673 CDD:409353 1/3 (33%)
Ig strand F 683..688 CDD:409353 2/4 (50%)
Ig strand G 696..699 CDD:409353 1/5 (20%)
IgI_7_Dscam 706..801 CDD:409546 20/94 (21%)
Ig strand A 706..710 CDD:409546 1/3 (33%)
Ig strand A' 715..719 CDD:409546 1/3 (33%)
Ig strand B 722..731 CDD:409546 1/8 (13%)
Ig strand C 737..743 CDD:409546 1/5 (20%)
Ig strand C' 749..752 CDD:409546 0/2 (0%)
Ig strand D 760..763 CDD:409546 0/2 (0%)
Ig strand E 766..772 CDD:409546 1/5 (20%)
Ig strand F 779..787 CDD:409546 0/7 (0%)
Ig strand G 792..801 CDD:409546 4/8 (50%)
Ig 804..889 CDD:472250 7/84 (8%)
Ig strand B 822..826 CDD:409353 0/3 (0%)
Ig strand C 835..839 CDD:409353 0/3 (0%)
FN3 <850..1254 CDD:442628 87/415 (21%)
Ig strand F 882..887 CDD:409353 2/4 (50%)
FN3 906..999 CDD:238020 5/92 (5%)
fn3 1117..1203 CDD:394996 22/92 (24%)
FN3 1185..>1580 CDD:442628 88/430 (20%)
FN3 1405..1494 CDD:238020 14/89 (16%)
Igdcc4XP_006511369.1 Ig 90..182 CDD:472250 25/117 (21%)
Ig strand B 103..107 CDD:409353 2/3 (67%)
Ig strand C 118..123 CDD:409353 1/4 (25%)
Ig strand E 141..145 CDD:409353 0/3 (0%)
Ig strand F 169..174 CDD:409353 2/4 (50%)
I-set 196..281 CDD:400151 25/91 (27%)
Ig strand B 211..215 CDD:409353 0/3 (0%)
Ig strand C 224..228 CDD:409353 1/3 (33%)
Ig strand E 246..250 CDD:409353 2/3 (67%)
Ig strand F 260..265 CDD:409353 2/4 (50%)
Ig strand G 278..281 CDD:409353 0/2 (0%)
IG_like 301..382 CDD:214653 27/96 (28%)
Ig strand B 312..316 CDD:409353 0/3 (0%)
Ig strand C 325..330 CDD:409353 2/4 (50%)
Ig strand E 346..350 CDD:409353 1/3 (33%)
Ig strand F 360..365 CDD:409353 2/4 (50%)
Ig strand G 375..378 CDD:409353 0/2 (0%)
Ig 401..473 CDD:472250 28/270 (10%)
Ig strand B 403..407 CDD:409353 0/3 (0%)
Ig strand C 416..420 CDD:409353 1/17 (6%)
Ig strand E 437..443 CDD:409353 2/5 (40%)
FN3 <453..>655 CDD:442628 62/317 (20%)
Ig strand F 453..458 CDD:409353 2/4 (50%)
Ig strand G 466..469 CDD:409353 0/2 (0%)
fn3 684..778 CDD:394996 29/112 (26%)
FN3 802..901 CDD:238020 22/156 (14%)
FN3 909..1001 CDD:238020 25/114 (22%)
Blue background indicates that the domain is not in the aligned region.

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