DRSC/TRiP Functional Genomics Resources

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Protein Alignment Dscam4 and sdk2b

DIOPT Version :9

Sequence 1:NP_001261571.1 Gene:Dscam4 / 2769008 FlyBaseID:FBgn0263219 Length:1935 Species:Drosophila melanogaster
Sequence 2:XP_009305142.1 Gene:sdk2b / 564922 ZFINID:ZDB-GENE-030131-8203 Length:2256 Species:Danio rerio


Alignment Length:1925 Identity:427/1925 - (22%)
Similarity:676/1925 - (35%) Gaps:558/1925 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   298 KARLEDSGKYLCWVNNTAGEETIQVSLTVTAPLTA---HLQPQVQTVDVDKDAQFQ-------CI 352
            |||:..     ||         |.:.|.|...|.:   .:.|..:|..|......:       |:
Zfish    26 KARMRP-----CW---------IVILLLVLLHLASAQDDVPPYFKTEPVPSQLHLERNRLVLTCM 76

  Fly   353 VSGHPVHDVNWLHDGKPILRDNRVEILTDPPRLIIKKVQKEDPGMYQCFVSNE-WEQIQSTAELQ 416
            ..|....:..|:|:...|.|.: :|.     |.:|..:.:...|.|:|.|.|. ...:|...|:|
Zfish    77 AEGSWPLEFKWIHNDTEITRFS-LEY-----RYLIPSLDRSHAGFYRCIVRNRVGALLQRRTEVQ 135

  Fly   417 LGDASPELLYWFSE----QTLQPG-----PTVSLKCVATGNPLPQFTWSLDGFPIPDSSRFLV-- 470
            :.     .:..|.|    |.:..|     |...::|.    |.||.||..||..||.|||..:  
Zfish   136 VA-----YMGSFEEGERTQAVSQGEGAVIPAPRIRCF----PQPQVTWFRDGRKIPPSSRIAITL 191

  Fly   471 --------------GQYVTIHDDVISHVNISNVKEEDGGEYTCTAQNAIGKVSHSAKVNIYGLPY 521
                          |:|      .:..||..|.:.:.|...|.:.:|..|.....|       |.
Zfish   192 DNTLVILSTVAPDAGRY------YVQAVNDKNGENKTGQHITLSVENVGGPADPIA-------PT 243

  Fly   522 IREMPKITG-ISG-SDLIVKCPVAGYPIDK--IHWERDGQTL-----PINRRQRAYNNGTLIIEQ 577
            |...|:.|. ||| |::.::|.....|:.|  |.|::||..:     ..|||....:        
Zfish   244 IVIPPRNTSVISGTSEVTMECVANARPLIKLSISWKKDGVLVRSGLSDFNRRLTVLS-------- 300

  Fly   578 LQRLEDAGTYTCMA--QNKQKQTSRRNVEIQVLVPPKIM--PIQAMTNMLREGMRAAISCQILEG 638
             ..:.|:|.|.|.|  ::...........:.||.||:.:  |.:.:|..:.:.:           
Zfish   301 -PAVSDSGFYECEAVLRSSSVPAVSAGAYLHVLEPPQFVKEPEKHITAEMEKVV----------- 353

  Fly   639 DLPVSFR--------WERNGKPLIGTGNEVFRRLDEYSASLVIEHISSDHSGNYTCIASNVAGTE 695
            |:|...|        |.::..|:.......:|.|.  ..||.:..:..|.:|.:.|.|.|.||..
Zfish   354 DIPCQARGVPQPDIVWYKDAVPISPVKTPRYRVLS--GGSLQVNGLLPDDTGMFQCFARNQAGEV 416

  Fly   696 RFTVPLTV-NVPPKWILEPKDSSAQAGADVLLHCQSSGYPTPTITWKKAIGPTPGE---YKDFLY 756
            :....|.| ::.|.....|.||:...|..|:|||::||.|.|.|||:|      ||   ....:.
Zfish   417 QTNTYLAVTSIAPNITAGPSDSTVIDGMSVILHCETSGAPRPAITWQK------GERVLASGSVQ 475

  Fly   757 EPTVQLFPNGTIFFKKISKESQGHFLCEAKNNIG---SGVSKVIFLKVNV--PAHFQTKTKQISV 816
            .|...|..:|::..........|.:.|.|.|:.|   :....|::.:..:  |...|      ||
Zfish   476 LPRFTLLESGSLLISPSHISDAGTYTCMASNSRGIDEASADLVVWARTRITNPPQDQ------SV 534

  Fly   817 AKGKQVHVQCNVQGDNPID--FKW----KIQATQQYLDESLDSRYTIRDQVLDDGMVSELGISHT 875
            .||.:..:.|.|..|..:.  |.|    ::..||......||...|             |.||.|
Zfish   535 IKGTKATMTCGVTHDPSVSVRFVWEKDGQVIVTQGLPRLRLDVNGT-------------LHISQT 586

  Fly   876 YRQDTGIYICQASNAFGQDEMSIQLIVQEVPEQPKN--LRINSQQSRSLQLTWSQPFAGNSPIEE 938
            :..|.|.|.|:.::..|.|..:..|.|:::|..|:|  ..::|.:.|::.|||::||.||||:..
Zfish   587 WSGDIGTYTCRVTSVGGNDSRNAHLRVRQLPHAPENPSAVLSSTEKRAINLTWAKPFDGNSPLIR 651

  Fly   939 YHIYYKQISDIWQNAEHLTIAGA-----QTVINIQQLRPAKAYHIRMSAENKLGASEFS-EVVQV 997
            |      |.::.:|....|:..|     .|.:.:..|.||::|..|:.|.|.:|..:|| |..:|
Zfish   652 Y------ILEVSENNAPWTVLLANIEPESTAVTVNGLIPARSYQFRLCAVNDVGKGQFSKETDRV 710

  Fly   998 TTLEEVPSGPPLAVRAEPKSSTEIFVTWDAPERDHWNGILLGYYVGYQMSLTPEDKEVNPTQGFS 1062
            :..||.||.||..|.|..:::..|.:.|..|...|.||||.||.:.|:::..|.|        ..
Zfish   711 SLPEEPPSAPPQNVIASGRTNQSIMIQWQPPPESHQNGILRGYIIRYRLTGLPVD--------IQ 767

  Fly  1063 FKTV---EVRSHFGGETVLANLNKFTQYHVIVQAYTSQGSGPPSKEIAVQTMEDVPSSPPESPQC 1124
            :|.:   :|.:     .:|.:|..:|.|.:.|.||...|.|....::...|::.||:..|.:.:.
Zfish   768 YKNISNPDVTN-----LLLEDLIIWTNYEIEVAAYNGAGLGVYCHKVTEWTLQGVPTIAPGNVKA 827

  Fly  1125 DVLGSTSIYITWSPPDIDGQNGKIKGYKVFYISVDELYETDPEVVKSTNQYVT----IENLRKYT 1185
            :.:.||:|..||:.|:....||..:|||:......:..||....|:...|...    |..|:|::
Zfish   828 EPVNSTTIRFTWTAPNPQFINGINQGYKLLAWEPGKEDETTVVTVRPNFQDSVHVGHIGGLKKFS 892

  Fly  1186 NYTVWVLAYTKVGDGMKTKPFYCRTHEDVPSAPQAIKAIPASSSKIIISWLPPDLPNGDITGYTF 1250
            .|...||.:|..|||.::.|...|||||.|.|...:.......:.:.:||..|:..||.:|||..
Zfish   893 EYYTSVLCFTTPGDGPRSSPRRLRTHEDTPGAVGHLSFTEILDTSLKVSWREPNEKNGVLTGYRI 957

  Fly  1251 YMSMLEGGREEGTHKRLLGPFVEMHETVRTQESATYQFWLTASTKMGEGEKTQVVTV-------- 1307
            ............|| .|....:|...|..| ...||...:.|.|..|:|:.:. .|:        
Zfish   958 SWEEYNRTNTRVTH-YLPNVTLEYRVTGLT-ALTTYTIEVAAMTSKGQGQLSS-STISSGVPPEL 1019

  Fly  1308 --PPNN----------------------------KVPARI---------VSFSQRIVTPWKEHLE 1333
              ||.|                            :|.|::         |...||...|....||
Zfish  1020 PGPPTNLAISNIGPRTVTLQFKPGYDGKTSISRWQVEAQVGVIGENEDWVMVHQRANEPDARSLE 1084

  Fly  1334 L--------------------------PCRKVG--------APAPVTI----------------- 1347
            :                          |.||:.        |||.||:                 
Zfish  1085 VSGLNPYTFYRFRMRQVNIVGTSPPSQPSRKIQTLQAPPDMAPANVTLRTASETSLWLRWVPLPE 1149

  Fly  1348 WRQDGHNMETSARKTIAKNG--------------------------TLYMKECQASD---AGNYT 1383
            |..:|:......|...::.|                          |.|....||.:   ||.::
Zfish  1150 WEYNGNPDSVGYRVQYSRTGAPSKALLHVIADRLEREFTIEDLEEWTEYEVRVQAINGIGAGPWS 1214

  Fly  1384 CSVENTWGKDEIVYNIVVKVPPEAP-NLTVINAYTDSLLLEWMD--NSHGGSPILGYVINYKRDN 1445
            ..|.....:         .||...| |::.....:.|:|:.|.:  .......||||.:.||..:
Zfish  1215 QPVRGRTRE---------SVPSCGPTNVSAFATTSSSILVRWFEVPEPDRNGLILGYKVAYKEKD 1270

  Fly  1446 GD-----WEELQVDSKTT-SHLLTNLWCGTRYQLYITAYNKIGTGLPC----------------- 1487
            .|     |   .|:...: |..||.|.....|::.:.|:.:||.|.|.                 
Zfish  1271 SDSPLQFW---TVEGNASHSVQLTGLGKYVLYEIQVLAFTRIGDGRPSTPSILERTLDDVPGPPV 1332

  Fly  1488 ---------------------------------------------DIVNS----YT--------- 1494
                                                         |::||    ||         
Zfish  1333 VILFPEVRTTSVRLIWQPPSQPNGIILAYQITYRLNSTNSNTATFDVLNSSARQYTVTGLRPESV 1397

  Fly  1495 --------------------------KGNPPVQPKHSQMITNNSTSVTCWLDSWGDGGCG---IL 1530
                                      :..|  ||.....:...:......|.||..|..|   |.
Zfish  1398 YVFRIRAQTRKGWGEAAEALVVTTEKRARP--QPTSRPTVPQENVQARSVLLSWEPGSDGLSPIR 1460

  Fly  1531 YFMIESRVYGRSSWAVVSNHIPPTERIYTVSDLVPGTKYQLKVTAHNNAGSTTAIYNFTTLSTQG 1595
            |:.::.|.....:|.|.|..:......|.|..|.|.|.||.:|.|.|:.|.:.            
Zfish  1461 YYTVQVRELPEKNWTVHSASVSHESSSYIVDRLKPFTSYQFRVKATNDIGDSD------------ 1513

  Fly  1596 VIYNNDHSTPVSHLSDLPFYANFKLLLPICFSLLMLLA------------LIGAALFLRKRKLAS 1648
              |:.: |..::.|.|.|..:...|.:....:..:|:.            |:|  ..:|.|:|..
Zfish  1514 --YSQE-SEAITTLQDAPDESPTILTVTPHTTTSVLICWQPPPEEKINGILLG--FRIRYRELLY 1573

  Fly  1649 QARLASSSM----SESPSLANLQNKQNRDQQYLAVRCNPGTSAPRGSNSNDSGSFGKAEGNEYIE 1709
            . ||.|.|:    |.|.|.|.|                   ::|....:....|..:.|    ::
Zfish  1574 D-RLRSFSVHTISSASASWAEL-------------------TSPYSMRNLSEPSLTQYE----LD 1614

  Fly  1710 DICPYATFQLNKQTYSESSYSGNVYSGPYHSVRGSFVYHDVKPESYHSKEPEYTKVRRKVGRLRD 1774
            ::..:..:::....|:.      |..||..|.:..||     .|:..:..|:...::.......|
Zfish  1615 NLLKHKRYEIRMSVYNA------VGEGPTSSPQEVFV-----GEAVPTAPPQNVIIQSATATQFD 1668

  Fly  1775 -----PHSESQESDNPG--------STDSEVRKILTLHIP--------ITEYDTLGSESDNDVSA 1818
                 |..|:|..|..|        ...:|..|:.||.:|        :|.|.|.      .:|.
Zfish  1669 VTWDPPPLETQNGDIQGYKIFFWEYQRKNETEKLRTLFLPEGGVKLKNLTGYTTY------MISV 1727

  Fly  1819 RALNSA---------KYRAQRDTQDETS--SSSETTPTSM 1847
            .|.|:|         :.|.|:......|  ..||.|.||:
Zfish  1728 AAFNAAGDGPRSPPTRGRTQQAAPSAPSFIHFSELTTTSV 1767

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Dscam4NP_001261571.1 Ig 31..124 CDD:416386
Ig strand A 32..35 CDD:409353
Ig strand A' 41..45 CDD:409353
Ig strand B 48..57 CDD:409353
Ig strand D 75..78 CDD:409353
Ig strand E 83..88 CDD:409353
Ig strand F 101..109 CDD:409353
Ig strand G 112..124 CDD:409353
Ig 235..326 CDD:416386 7/27 (26%)
Ig strand A 235..238 CDD:409353
Ig strand A' 244..248 CDD:409353
Ig strand B 251..258 CDD:409353
Ig strand C 266..271 CDD:409353
Ig strand C' 276..279 CDD:409353
Ig strand D 285..289 CDD:409353
Ig strand E 292..298 CDD:409353 427/1925 (22%)
Ig strand F 305..313 CDD:409353 2/7 (29%)
Ig strand G 316..326 CDD:409353 2/9 (22%)
IgC2_3_Dscam 329..417 CDD:409549 20/98 (20%)
Ig strand B 347..351 CDD:409549 0/10 (0%)
Ig strand C 360..364 CDD:409549 0/3 (0%)
Ig strand E 383..387 CDD:409549 1/3 (33%)
Ig strand F 397..402 CDD:409549 2/4 (50%)
Ig strand G 410..413 CDD:409549 1/2 (50%)
IgI_4_Dscam 422..516 CDD:409548 28/118 (24%)
Ig strand B 439..443 CDD:409548 0/3 (0%)
Ig strand C 452..456 CDD:409548 2/3 (67%)
Ig strand E 482..486 CDD:409548 1/3 (33%)
Ig strand F 496..501 CDD:409548 1/4 (25%)
Ig strand G 509..512 CDD:409548 0/2 (0%)
IgI_5_Dscam 520..607 CDD:409550 23/97 (24%)
Ig strand B 536..540 CDD:409550 0/3 (0%)
Ig strand C 549..553 CDD:409550 2/5 (40%)
Ig strand E 571..575 CDD:409550 0/3 (0%)
Ig strand F 586..591 CDD:409550 2/4 (50%)
Ig strand G 600..603 CDD:409550 0/2 (0%)
Ig 610..703 CDD:416386 21/102 (21%)
Ig strand A 611..613 CDD:409353 1/1 (100%)
Ig strand A' 620..624 CDD:409353 1/3 (33%)
Ig strand B 627..636 CDD:409353 0/8 (0%)
Ig strand C 641..648 CDD:409353 3/14 (21%)
Ig strand C' 650..652 CDD:409353 0/1 (0%)
Ig strand D 659..664 CDD:409353 1/4 (25%)
Ig strand E 668..675 CDD:409353 2/6 (33%)
Ig strand F 682..690 CDD:409353 3/7 (43%)
Ig strand G 693..702 CDD:409353 1/8 (13%)
IgI_7_Dscam 706..801 CDD:409546 28/100 (28%)
Ig strand B 724..728 CDD:409546 2/3 (67%)
Ig strand C 737..741 CDD:409546 2/3 (67%)
Ig strand E 766..770 CDD:409546 1/3 (33%)
Ig strand F 780..785 CDD:409546 1/4 (25%)
Ig strand G 794..797 CDD:409546 0/2 (0%)
Ig 818..904 CDD:416386 24/91 (26%)
putative Ig strand B 820..827 CDD:409353 0/6 (0%)
putative Ig strand C 835..841 CDD:409353 2/11 (18%)
putative Ig strand C' 853..856 CDD:409353 0/2 (0%)
putative Ig strand D 862..866 CDD:409353 0/3 (0%)
putative Ig strand E 868..874 CDD:409353 2/5 (40%)
putative Ig strand F 881..889 CDD:409353 3/7 (43%)
putative Ig strand G 892..902 CDD:409353 3/9 (33%)
FN3 906..999 CDD:238020 32/100 (32%)
FN3 1006..1110 CDD:238020 28/106 (26%)
fn3 1117..1203 CDD:394996 26/89 (29%)
FN3 1215..1307 CDD:238020 22/91 (24%)
Ig <1334..1401 CDD:416386 19/146 (13%)
Ig strand C 1345..1349 CDD:409353 2/20 (10%)
Ig strand D 1363..1366 CDD:409353 0/2 (0%)
Ig strand E 1367..1372 CDD:409353 3/30 (10%)
Ig strand F 1380..1388 CDD:409353 2/7 (29%)
Ig strand G 1394..1401 CDD:409353 0/6 (0%)
FN3 1405..1494 CDD:238020 27/163 (17%)
FN3 1499..1580 CDD:238020 23/83 (28%)
sdk2bXP_009305142.1 IGc2 69..125 CDD:197706 14/61 (23%)
IG_like 70..136 CDD:214653 16/71 (23%)
I-set 147..230 CDD:254352 23/92 (25%)
Ig 156..230 CDD:299845 21/83 (25%)
I-set 242..331 CDD:254352 23/97 (24%)
IGc2 260..313 CDD:197706 14/61 (23%)
I-set 335..424 CDD:254352 20/101 (20%)
Ig 357..424 CDD:299845 15/68 (22%)
I-set 429..519 CDD:254352 27/95 (28%)
Ig 443..519 CDD:299845 23/81 (28%)
I-set 524..613 CDD:254352 27/107 (25%)
Ig 529..613 CDD:299845 26/102 (25%)
FN3 617..707 CDD:238020 30/95 (32%)
fn3 720..803 CDD:278470 27/95 (28%)
FN3 821..917 CDD:238020 27/95 (28%)
FN3 922..1010 CDD:238020 22/90 (24%)
FN3 1020..1114 CDD:238020 12/93 (13%)
fn3 1126..1214 CDD:278470 15/87 (17%)
FN3 1230..1318 CDD:238020 24/90 (27%)
FN3 1328..1421 CDD:238020 5/92 (5%)
FN3 1427..1522 CDD:238020 27/111 (24%)
FN3 1532..1643 CDD:238020 24/142 (17%)
FN3 1653..1746 CDD:238020 19/98 (19%)
FN3 1751..1848 CDD:238020 6/17 (35%)
fn3 1875..1952 CDD:278470
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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