DRSC/TRiP Functional Genomics Resources

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Protein Alignment Dscam4 and sdk1a

DIOPT Version :9

Sequence 1:NP_001261571.1 Gene:Dscam4 / 2769008 FlyBaseID:FBgn0263219 Length:1935 Species:Drosophila melanogaster
Sequence 2:XP_009297968.1 Gene:sdk1a / 558391 ZFINID:ZDB-GENE-081104-374 Length:2245 Species:Danio rerio


Alignment Length:2287 Identity:484/2287 - (21%)
Similarity:787/2287 - (34%) Gaps:676/2287 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 LILYVIRAETSQFVNGLDLQGPIFLHEP-PHRVEFSNNSGGLIECSGHGSPPPEVEWTPIPPQQD 74
            |.::|:.|.|...|      .|.|..|| |..:....|. .::.|...||.|.|.:|        
Zfish   110 LQVHVLEAVTQGDV------APYFKTEPGPPEIHLEGNR-LVMTCLAEGSWPLEFKW-------- 159

  Fly    75 MVFQLSNGSMMFYPFTAEKYRHEVHAT------VYRCKLRNLVGTVLSREVHVRGVVNQKYAVQV 133
               .|:|..:..:   :.:|::.:.:.      ||:|.:||.:|.:|.::..::......:....
Zfish   160 ---MLNNTDITAF---SPEYKYTISSLQRSNMGVYQCVVRNRMGALLQKKAEIQVAYMGDFIDND 218

  Fly   134 HDEYVMTGNTAVLKCQVPSYMSEFVLVTAWVQDTGMHLYPNTDIGGKYTVLSNGELYINNAGPND 198
            ..:.|..|..|:|.....|.... ..|| |.:| |..:.|:..|    .:....:|.:.....:|
Zfish   219 QRKTVTQGRAAILNSPAVSCFPR-PQVT-WFRD-GYKIIPSNRI----AITLENQLVVLGTAASD 276

  Fly   199 AYKSYTCRTVNRLTGEVQIS-----------TYPGRIIVTEPKGMVQPRINVEKHSMRHVVLNGQ 252
            |.:.|. :.||...||.:.|           .|.|......|...|.|.|.:...:...|....:
Zfish   277 AGRYYV-QAVNEKNGENKTSPSIYLNVAANKKYRGSHDSEAPADPVAPVIVIPPRNTTVVAGISE 340

  Fly   253 TTLPCIAQGHPVP--TYRWFKEENEQLLPL-QLSERITIVSAGLLKITKARLEDSGKYLC---WV 311
            .||.|:|...||.  :..|.:...|....: ..|.|:||::        ....|.|.|:|   .:
Zfish   341 ATLECVANARPVEKLSLVWRRNGVEVASGVGSFSRRLTIIN--------PTSTDVGMYVCEALLL 397

  Fly   312 NNTAGEETIQVSLTVT-AP-LTAHLQPQVQTV-DVDKDAQFQCIVSGHPVHDVNWLHDGKPI--L 371
            :::......:..|::| || .||  :|:.:.: :|:|....||...|.|:..:.|..|..|:  |
Zfish   398 DSSVKPAEARAFLSITEAPYFTA--EPRRKMMGEVEKSVDIQCQARGVPMPKLEWYKDAVPLSKL 460

  Fly   372 RDNRVEILTDPPRLIIKKVQKEDPGMYQCFVSNEWEQIQSTAELQLGDASPELLYWFSEQTLQPG 436
            .:.|.:|::. ..|.::|:|..|.|::|||..|...:.|....|.:...:|.......:.|:..|
Zfish   461 NNPRYKIISS-MGLQVRKLQPSDAGIFQCFARNSAGEAQVHTYLDVTSMAPAFTAPPLDITVTDG 524

  Fly   437 PTVSLKCVATGNPLPQFTWSLDGFPIPDSSRFLVGQYVTIHDDVISHVNISNVKEEDGGEYTCTA 501
            ...:..|..:|.|.|...|..| ..|..|....:.::..:..   ..:.|..|..:|.|.|||.|
Zfish   525 AVAAFTCRVSGAPKPAIVWRRD-TQILASGSVQIPRFTLLES---GGLQIQPVVLQDTGNYTCYA 585

  Fly   502 QNAIGKVSHSAKVNIYGLPYIREMP---KITGISGSDLIVKCPVAGYPIDKIH--WERDGQTLPI 561
            .|:.|.::.||.:.::....|...|   ::  |.|:..|::|.....|...:.  |::|.:.:..
Zfish   586 ANSEGAINASASLTVWSRTSISSPPTDRRV--IKGTTAILECGATHDPRVGVRYVWKKDEELVSH 648

  Fly   562 NRRQR-AYNNGTLIIEQLQRLEDAGTYTC----MAQNKQKQTSRRNVEIQVLVPPKIMPIQAMTN 621
            :|..| :...|:|.|.|... .|.|.|||    .|.|:.|:.....:|:    |.....:||..|
Zfish   649 SRGGRISLQEGSLHISQTWS-GDIGNYTCDVISEAGNESKEARLEVIEL----PHSPRNLQASLN 708

  Fly   622 MLREGMRAAISCQILEGDLPVSFRWER---NGKPL------IGTGNEVFR----RLDEYSASLVI 673
                          ......|...|.|   ...||      :...|..:|    .:|......::
Zfish   709 --------------ANDSRSVDLSWMRPFDGNSPLLHYVVELSENNSPWRVYLSDVDPSGTGAMV 759

  Fly   674 EHISSDHSGNYTCIASNVAGTERFTVPLT--------VNVPPKWIL-----------------EP 713
            :.::...|..:...|.|..|..:::....        .:.|||.|:                 ||
Zfish   760 KGLTPARSYQFRVCAVNQVGRGQYSTETNRLMLREEPPSAPPKNIVASGRTNQSIMVQWQPPPEP 824

  Fly   714 KDSSAQAGADVLLHCQSSGYP------------------TPTITW-------------------- 740
            :.:....|  .:|..:.:|.|                  |..|.|                    
Zfish   825 QLNGVLRG--YVLRYRLAGLPGEYQQKNISSPEINYCLITELIIWTQYEIQVAAYTGAGLGVFSQ 887

  Fly   741 -------------------KKAIGPTPGEYKDFLYEPTVQLFPNGTIFFKKISKESQGHFLC--- 783
                               .||:..|..|   |.:.|..|.|.||.         :||:.|.   
Zfish   888 PVTEYTLQGVPTAPPQGVEAKAVNSTTIE---FSWNPPPQQFINGI---------NQGYKLMAWP 940

  Fly   784 ----------------EAKNNIG--SGVSKVIFLKVNV-------------PAHFQTKTKQISVA 817
                            ....::|  ||:.|..:...:|             |...|| .:.|...
Zfish   941 ERSPEEVIVVTITPDYHGTRHLGYISGLRKFSWYLTSVLCFTTPGNGPRSPPKLVQT-FEDIPGP 1004

  Fly   818 KGKQ-----VHVQCNVQGDNPID---------FKWKIQATQQ------YLDESLDSRYT----IR 858
            .|:.     :.....|..:.|:|         ..|::|...|      ..:.:||.:.|    :.
Zfish  1005 VGRLSFTEILDTSLKVSWEEPVDKNGIITGYLVSWEVQGNNQSRVARNLANTTLDYKVTGLTSLT 1069

  Fly   859 DQVLDDGMVSELGISHTYRQDTGIYICQASNAFGQDEMSIQLIVQEVPEQPKNLRINSQQSRSLQ 923
            ...|:...::|.|:.         .:..::.:.|        :..|:|..|.||.|:...|||..
Zfish  1070 TYTLEVAAMTEAGVG---------TVTSSTISSG--------VPPELPGPPSNLVISKISSRSAT 1117

  Fly   924 LTWSQPFAGNSPIEEYHIYYKQISDIWQNAEHLTIAGAQT-----VINIQQLRPAKAYHIRMSAE 983
            |.:.....|.:.|.:: |...|:..|.::.|...:...:.     ::.:..|.|...|..||...
Zfish  1118 LKFRAGDDGKTAISKW-IVEGQVGSIGEDEEWKVLYEKENDPEAQMLEVPNLTPFTHYRFRMRQV 1181

  Fly   984 NKLGASEF---SEVVQVTTLEEVPSGPPLAVRAEPKSSTEIFVTWDAPERDHWNGILLGYYVGYQ 1045
            |.:|.|..   |.|:|  ||:..|...|.:|.....|.|.:::.|.......:||  ....|||:
Zfish  1182 NIVGPSAVSVPSRVIQ--TLQAPPDVAPSSVTVRTASETSLWLRWVPLPESEYNG--NPESVGYR 1242

  Fly  1046 MSLTPEDKEVNPTQGFSFKTVEVRSHFGGETVLANLNKFTQYHVIVQAYTSQGSGPPSKEIAVQT 1110
            :.:...|.....:      |..:......|..|..|.::|:|.:.:||:.|.|.||.|:.:..:|
Zfish  1243 VRVMRADLRGEAS------TRLLNDRLEREITLEGLEEWTEYQLQIQAFNSIGPGPWSESVKGRT 1301

  Fly  1111 MEDVPSSPPESPQCDVLGSTSIYITWSPPDIDGQNGKIKGYKVFYISVDELYETDPEVVK-STNQ 1174
            .|.|||..||:...:.:.|:.|.:||.|.....|||.|.||||.:...|...|....||| :..|
Zfish  1302 RESVPSGAPENVTAEAMSSSRILVTWGPVPEHEQNGNILGYKVLFKEKDSDSEAQVNVVKGNLTQ 1366

  Fly  1175 YVTIENLRKYTNYTVWVLAYTKVGDG-MKTKPFYCRTHEDVPSAPQAIKAIPASSSKIIISWLPP 1238
            .|.:.|||||..|.:.|||:|::||| :...|...||.:|||..|..:.......:::.:.|.||
Zfish  1367 SVLLRNLRKYVQYEIQVLAFTRIGDGQLSNPPVLERTKDDVPGPPMRLVFPEVRLTEVRVVWQPP 1431

  Fly  1239 DLPNGDITGYTFYMSMLEGGR------EEGTHKRLLGPFVEMHETVRTQESATYQFWLTASTKMG 1297
            ..|||.|.||.....:..|..      |.|...|      :...:..|.||| |.|.::|.|:.|
Zfish  1432 VDPNGIIMGYQVAYRLDSGDPNQFITIEVGPDTR------QFTASSLTPESA-YIFRISAKTEQG 1489

  Fly  1298 EGEKTQVVTV---------PPNN-KVPARIVSFSQRIVTPW--------------KEHLELPCR- 1337
            .|...|.|.:         ||.. :||...|. |::::..|              .:..|||.. 
Zfish  1490 WGSPAQAVVITTEIRERPQPPRQLRVPQDHVQ-SRKLLLNWVPGGDGSSPVRYFTLQTQELPSGE 1553

  Fly  1338 ---------------KVGAPAPVTIWR----------QDGHNMETSARKTI-------------- 1363
                           :|....|.|.::          ...::.||.|..|:              
Zfish  1554 WITHSSAISHNYSSWEVDRLKPFTSYKLRMMATNDVGDSKYSQETDAITTLQDVPDEAPMIQSVK 1618

  Fly  1364 -----------------AKNGT-----LYMKECQASD-------------------AGNYTCSVE 1387
                             :.||.     ||.:|.|...                   |.:...:|.
Zfish  1619 PSTTTSVLVQWQTPKEESVNGVLVGYRLYYRELQYDSTPQDSKRPVNSSQLRTELTAKSTVKTVS 1683

  Fly  1388 N------------TWGKDEIV---YNIVVKVPPEAP---------------NLTVINAYTDSLLL 1422
            |            .:.:.|||   ||::.:.||.||               |:.:....:..|.:
Zfish  1684 NPSLTEFELTQLQKYRRYEIVMTAYNVIGESPPSAPVEVFVGEAAPSVAPQNIQINTLSSTQLEV 1748

  Fly  1423 EW----MDNSHGGSPILGYVINYKRDNGDWEELQVDSKT------------TSHLLTNLWCGTRY 1471
            :|    .:..:|  .|.||.|.|      ||   :||:.            |:..|.||...|.|
Zfish  1749 QWEPPPAETQNG--IIQGYKILY------WE---MDSQNETERVKILFRPETNMRLKNLTSYTYY 1802

  Fly  1472 QLYITAYNKIGTG---------------------------------------LPCDIVNSY---- 1493
            .:.:.|:|..|.|                                       .|..:|..|    
Zfish  1803 MVKLLAFNAAGDGPFSEPRRGRTLQAAPSAPSFISFSEVTSSTLNVSWGFPLSPNGVVEGYRVVY 1867

  Fly  1494 ------------------------------TKG--------------NP---------PVQPKHS 1505
                                          |||              .|         ||:....
Zfish  1868 EPTAPIQGVTKVVTVDIRGSWQRWLKVRDLTKGMTYCFRVQAKTIAYGPEAEANITAGPVKGSPG 1932

  Fly  1506 QMITNNSTSVTCWLD-SW--GDGGCG-ILYFMIESRVYGRSSWAVVSNHIPPTERIYTVS--DLV 1564
            ..:..:.|.....|: .|  |:.|.| :..::||:|......|.....|:|||...::||  .|.
Zfish  1933 SPVEMSITKTGSMLNIQWTAGETGAGHVTGYVIEARPSDEGLWDTFVRHLPPTSTSHSVSLDRLR 1997

  Fly  1565 PGTKYQLKVTAHNNAGSTTAIYNFTTLSTQGVIYNNDHSTPVSHLS---DLPFYAN--FKLLLPI 1624
            .|..||.:|.|.|..|                  ..:.|.|.:.:|   |.|||..  |.::|.:
Zfish  1998 QGISYQFRVLAVNEFG------------------YGEPSAPSAAMSAQVDTPFYEEWWFLIVLAL 2044

  Fly  1625 CFSLLMLLALIGAALFLRKRKLAS-QARLASSSMSESPSLAN-----LQ-NKQNRDQQYLAVRCN 1682
            |..:|:||.:.|..|..:.||..| ....|.|::.|:.:|.|     |: |.:....:.:.:|.|
Zfish  2045 CGLILLLLVVFGLVLHGQNRKYKSCGTGKAVSTVEETVTLDNGGFTALELNSRPVHVKGVFLRKN 2109

  Fly  1683 PGTSAPR----GSNSNDSGSFGKAEGNEYIEDICPYATFQLNKQTYSESSYSGNVYSG------- 1736
            ...|.||    |...:|             ||||              |:|:|.|.:.       
Zfish  2110 GTRSPPRPNPAGLRYSD-------------EDIC--------------SNYNGVVSTESTALTER 2147

  Fly  1737 --------------PYHSVRGSFVYHDVKPESYHSKEPEYTKVRRKVGRLRDPHSESQESDNPGS 1787
                          ....::.|||.|.:...||      :...:|:...|:...:.|.|....|.
Zfish  2148 PAEMSESEATDSECEEEPIKHSFVNHYMSDPSY------FNSWKRQQKGLKQTLACSYEECASGD 2206

  Fly  1788 TDSEVRKILTLH 1799
            .:|..:.::|.|
Zfish  2207 NESYYQTVVTQH 2218

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Dscam4NP_001261571.1 Ig 31..124 CDD:416386 22/99 (22%)
Ig strand A 32..35 CDD:409353 1/2 (50%)
Ig strand A' 41..45 CDD:409353 0/3 (0%)
Ig strand B 48..57 CDD:409353 1/8 (13%)
Ig strand D 75..78 CDD:409353 0/2 (0%)
Ig strand E 83..88 CDD:409353 0/4 (0%)
Ig strand F 101..109 CDD:409353 3/13 (23%)
Ig strand G 112..124 CDD:409353 2/11 (18%)
Ig 235..326 CDD:416386 20/96 (21%)
Ig strand A 235..238 CDD:409353 1/2 (50%)
Ig strand A' 244..248 CDD:409353 0/3 (0%)
Ig strand B 251..258 CDD:409353 2/6 (33%)
Ig strand C 266..271 CDD:409353 1/4 (25%)
Ig strand C' 276..279 CDD:409353 0/2 (0%)
Ig strand D 285..289 CDD:409353 2/3 (67%)
Ig strand E 292..298 CDD:409353 0/5 (0%)
Ig strand F 305..313 CDD:409353 3/10 (30%)
Ig strand G 316..326 CDD:409353 1/9 (11%)
IgC2_3_Dscam 329..417 CDD:409549 27/91 (30%)
Ig strand B 347..351 CDD:409549 0/3 (0%)
Ig strand C 360..364 CDD:409549 0/3 (0%)
Ig strand E 383..387 CDD:409549 1/3 (33%)
Ig strand F 397..402 CDD:409549 2/4 (50%)
Ig strand G 410..413 CDD:409549 1/2 (50%)
IgI_4_Dscam 422..516 CDD:409548 23/93 (25%)
Ig strand B 439..443 CDD:409548 0/3 (0%)
Ig strand C 452..456 CDD:409548 0/3 (0%)
Ig strand E 482..486 CDD:409548 0/3 (0%)
Ig strand F 496..501 CDD:409548 3/4 (75%)
Ig strand G 509..512 CDD:409548 0/2 (0%)
IgI_5_Dscam 520..607 CDD:409550 24/96 (25%)
Ig strand B 536..540 CDD:409550 1/3 (33%)
Ig strand C 549..553 CDD:409550 0/5 (0%)
Ig strand E 571..575 CDD:409550 2/3 (67%)
Ig strand F 586..591 CDD:409550 3/8 (38%)
Ig strand G 600..603 CDD:409550 0/2 (0%)
Ig 610..703 CDD:416386 16/113 (14%)
Ig strand A 611..613 CDD:409353 0/1 (0%)
Ig strand A' 620..624 CDD:409353 1/3 (33%)
Ig strand B 627..636 CDD:409353 0/8 (0%)
Ig strand C 641..648 CDD:409353 2/6 (33%)
Ig strand C' 650..652 CDD:409353 0/1 (0%)
Ig strand D 659..664 CDD:409353 1/8 (13%)
Ig strand E 668..675 CDD:409353 0/6 (0%)
Ig strand F 682..690 CDD:409353 1/7 (14%)
Ig strand G 693..702 CDD:409353 1/8 (13%)
IgI_7_Dscam 706..801 CDD:409546 30/189 (16%)
Ig strand B 724..728 CDD:409546 1/3 (33%)
Ig strand C 737..741 CDD:409546 2/42 (5%)
Ig strand E 766..770 CDD:409546 1/3 (33%)
Ig strand F 780..785 CDD:409546 1/23 (4%)
Ig strand G 794..797 CDD:409546 1/2 (50%)
Ig 818..904 CDD:416386 14/109 (13%)
putative Ig strand B 820..827 CDD:409353 0/11 (0%)
putative Ig strand C 835..841 CDD:409353 2/14 (14%)
putative Ig strand C' 853..856 CDD:409353 0/2 (0%)
putative Ig strand D 862..866 CDD:409353 1/3 (33%)
putative Ig strand E 868..874 CDD:409353 2/5 (40%)
putative Ig strand F 881..889 CDD:409353 0/7 (0%)
putative Ig strand G 892..902 CDD:409353 1/9 (11%)
FN3 906..999 CDD:238020 26/100 (26%)
FN3 1006..1110 CDD:238020 24/103 (23%)
fn3 1117..1203 CDD:394996 35/87 (40%)
FN3 1215..1307 CDD:238020 27/97 (28%)
Ig <1334..1401 CDD:416386 23/162 (14%)
Ig strand C 1345..1349 CDD:409353 1/3 (33%)
Ig strand D 1363..1366 CDD:409353 0/33 (0%)
Ig strand E 1367..1372 CDD:409353 3/9 (33%)
Ig strand F 1380..1388 CDD:409353 1/7 (14%)
Ig strand G 1394..1401 CDD:409353 5/9 (56%)
FN3 1405..1494 CDD:238020 29/192 (15%)
FN3 1499..1580 CDD:238020 25/86 (29%)
sdk1aXP_009297968.1 I-set 125..208 CDD:254352 22/97 (23%)
Ig 125..204 CDD:299845 22/93 (24%)
IG_like 222..302 CDD:214653 21/87 (24%)
Ig 236..287 CDD:299845 13/58 (22%)
Ig_3 322..394 CDD:290638 19/79 (24%)
I-set 323..412 CDD:254352 20/96 (21%)
I-set 416..505 CDD:254352 27/91 (30%)
Ig 436..500 CDD:299845 20/64 (31%)
I-set 510..600 CDD:254352 23/93 (25%)
Ig 527..600 CDD:299845 20/76 (26%)
I-set 605..693 CDD:254352 23/90 (26%)
Ig 610..693 CDD:299845 22/85 (26%)
FN3 697..788 CDD:238020 16/104 (15%)
fn3 800..886 CDD:278470 13/87 (15%)
FN3 901..997 CDD:238020 19/107 (18%)
FN3 1002..1090 CDD:238020 13/96 (14%)
FN3 1100..1196 CDD:238020 24/96 (25%)
FN3 1206..1301 CDD:238020 24/102 (24%)
FN3 1308..1397 CDD:238020 35/88 (40%)
FN3 1408..1501 CDD:238020 27/99 (27%)
FN3 1507..1602 CDD:238020 16/95 (17%)
FN3 1616..1722 CDD:238020 18/105 (17%)
FN3 1732..1825 CDD:238020 23/103 (22%)
FN3 1830..1919 CDD:238020 7/88 (8%)
FN3 1931..2021 CDD:238020 25/107 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3510
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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