DRSC/TRiP Functional Genomics Resources

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Protein Alignment Dscam4 and sdk1b

DIOPT Version :9

Sequence 1:NP_001261571.1 Gene:Dscam4 / 2769008 FlyBaseID:FBgn0263219 Length:1935 Species:Drosophila melanogaster
Sequence 2:XP_017211454.1 Gene:sdk1b / 555553 ZFINID:ZDB-GENE-090311-17 Length:2292 Species:Danio rerio


Alignment Length:2099 Identity:461/2099 - (21%)
Similarity:705/2099 - (33%) Gaps:665/2099 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   121 VRGVVNQKYAVQVHDEYVMTGNTAVLKCQVPSYMSEFVLVTAW------VQDTGMHLYPNTDIGG 179
            |:|::|:    |.:....|||..   :|.:.:::  |.||..|      .|||..  |..|:.||
Zfish   124 VKGIINR----QGNTAKAMTGKA---RCGMWAWI--FALVFLWNTHMLRAQDTAP--YFKTETGG 177

  Fly   180 KYTVLSNGELYINNAGPNDAYKSYTCRTVNRLTGEVQISTYPGRIIVTEPKGMVQPRINVEKHSM 244
            ..|.|..                      |||                                 
Zfish   178 AQTHLEG----------------------NRL--------------------------------- 187

  Fly   245 RHVVLNGQTTLPCIAQGHPVPTYRWFKEENE--QLLPLQLSERITIVSAGLLKITKARLEDSGKY 307
                     .|.|:|:|.....::|.:...:  :..|   ..|.||||        .:.||:|.|
Zfish   188 ---------VLTCLAEGSWPLEFKWMRNSTDITEYTP---EYRYTIVS--------LKREDAGVY 232

  Fly   308 LCWVNNTAGEETIQVSLTVTAPLT---AHLQPQVQTVDVDKDAQFQ-CIVSGHPVHDVNWLHDGK 368
            .|.|.|..| ..||....|.....   |.|: |.:||...:.|... ..|:..|...|.|..||.
Zfish   233 QCAVRNRMG-ALIQTRADVRVAYMDNFAELE-QRKTVSQGRAAVLNPPAVTSFPRPQVTWFRDGV 295

  Fly   369 PILRDNRVEILTDPPRLIIKKVQKEDPGMYQCFVSNE------------------------WEQI 409
            .|:.::||.|..| .:|::......|.|.|.....||                        ...:
Zfish   296 KIIPNHRVAITLD-NQLVVLSTAAADAGRYYVQAVNERNGENKTSPSIYLSIAINKRNRGSLADV 359

  Fly   410 QSTAELQLGDASPELLYWFSEQTLQPGPT-VSLKCVATGNPLP--QFTWSLDGFPIPDSSRFLVG 471
            .:.|||    .:|.::......::..|.: .:|:|||....|.  |..|..:|.      |...|
Zfish   360 IAPAEL----VAPVIVIAPKNTSVVAGASEATLECVANARSLDRLQVFWKRNGV------RLTAG 414

  Fly   472 QYVTIHDDVISHVNISNVKEEDGGEYTC--TAQNAIGKVSHS-AKVNIYGLPYIREMPKITGIS- 532
            .     |.....:.|||....|||.|.|  |.:|:..|.:.: |.:::...|:....||...|: 
Zfish   415 V-----DSFGRRLVISNPTSADGGLYVCEATLRNSSQKSTEAKAYLSVLESPHFTSKPKRYMIAE 474

  Fly   533 -GSDLIVKCPVAGYPIDKIHWERDGQTLPINRRQRAYNNGTLIIEQLQRL--EDAGTYTCMAQNK 594
             ..::.::|...|.|..|:.|.:|...|......|.....:.::.|::|:  :|||.:.|.|:|.
Zfish   475 VEKNVELQCHAKGVPTPKLEWFKDAIPLSTLNNSRYKLTTSSMVLQVRRIQPDDAGIFQCFAENT 539

  Fly   595 QKQ-TSRRNVEIQVLVPPKIMPIQAMTNMLREGMRAAISCQILEGDLPVSFRWERNGKPLIGTGN 658
            ..: .:..|:.|..:.|....|...:|  :.:|..|..:|.......| :..| |.|..::.:|:
Zfish   540 AGEIQAHTNLVITSMSPLFTTPPSDIT--VTDGTSAVFTCDTSGAPKP-AIVW-RKGSQVLASGS 600

  Fly   659 ---EVFRRLDEYSASLVIEHISSDHSGNYTCIASNVAGTERFTVPLTV------NVPPKWILEPK 714
               ..|..|:  |..|.|..|....:|||||:|||..|....||.|||      :.|      |:
Zfish   601 VQTPRFTLLE--SGGLQILPIMPSDAGNYTCLASNTEGLVNATVALTVLSRTFISTP------PE 657

  Fly   715 DSSAQAGADVLLHCQSSGYPTPTI--TWKKAIGPTPGEYKDFLYEPTVQLFPNGTIFFKKISKES 777
            |.....|...:|||.::..|..|:  :|||.                                  
Zfish   658 DQRVIKGTTAVLHCAATHDPRVTVRYSWKKG---------------------------------- 688

  Fly   778 QGHFLCEAKNNIGSGVSKVIFLKVNVPAHFQTKTKQISVAKGKQVHVQCNVQGDNPIDFKWKIQA 842
                                             ||.:||:.|.:|.::                 
Zfish   689 ---------------------------------TKPLSVSTGGRVSMK----------------- 703

  Fly   843 TQQYLDESLDSRYTIRDQVLDDGMVSELGISHTYRQDTGIYICQASNAFGQDEMSIQLIVQEVPE 907
                                 :|   .|.||.|:..|.|.|.|:..:..|.|..|.:|.|.|:|.
Zfish   704 ---------------------EG---SLQISQTWSGDIGDYTCRVISPAGNDSKSARLEVIELPH 744

  Fly   908 QPKNLRI--NSQQSRSLQLTWSQPFAGNSPIEEYHIYYKQISDIWQ--------NAEHLTIAGAQ 962
            .|:||::  |...||::.|:|.:||.||||:..|.|.:.:.:..|:        ....|.:.|  
Zfish   745 SPRNLQVALNETDSRTVLLSWVRPFDGNSPLLHYIIEFSENNSPWKVYMDDVSPTLASLLVIG-- 807

  Fly   963 TVINIQQLRPAKAYHIRMSAENKLGASEFS-EVVQVTTLEEVPSGPPLAVRAEPKSSTEIFVTWD 1026
                   |.||:.|..|:.|.|::|..::| |..::...||.||.||..:.|..:::..|.|.|.
Zfish   808 -------LTPARTYQFRVCAVNQVGRGQYSAETNRLMLREEPPSAPPKNIVASGRTNQSIMVQWQ 865

  Fly  1027 APERDHWNGILLGYYVGYQMSLTPEDKEVNPTQGFSFKTV---EVRSHFGGETVLANLNKFTQYH 1088
            .|.....||:|.||.:.|:::..|.:        |..|.:   |:.....||.::     :|||.
Zfish   866 PPPEPQLNGVLRGYVLRYRLAGLPGE--------FQLKNITSAEINYCLIGELII-----WTQYE 917

  Fly  1089 VIVQAYTSQGSGPPSKEIAVQTMEDVPSSPPESPQCDVLGSTSIYITWSPPDIDGQNGKIKGYKV 1153
            :.|.|||..|.|..|:.....|::.||::||:..:...|.||:|..||:||.....||..:|||:
Zfish   918 IQVAAYTGAGLGVYSQSATEYTLQGVPTAPPQDVEAVALNSTTIKFTWTPPPQQFINGINQGYKL 982

  Fly  1154 FYISVDELYETDPEVV---------KSTNQYVTIENLRKYTNYTVWVLAYTKVGDGMKTKPFYCR 1209
            ....     |..|:.:         ..:..|..:.||||:|.|...||.:|..|||..:.....:
Zfish   983 LVWP-----EHCPDCITMVTIAPEFHGSRHYGYVSNLRKFTWYETAVLCFTTPGDGPASTSQLIQ 1042

  Fly  1210 THEDVPSAPQAIKAIPASSSKIIISWLPPDLPNGDITGYTFYMSMLEGGREEGTHKRLLGPFVEM 1274
            ||.|.|.....:.......:.:.|||..|:..||.||||.  :|..|.|:.|....:.|......
Zfish  1043 THVDKPGPVTQLSFTEILDTSLRISWQEPEDKNGIITGYV--LSWQEAGQNETLVSQTLSNSTLA 1105

  Fly  1275 HETVRTQESATYQFWLTASTKMGEGEKTQVVT---VPPN-NKVPARIV--SFSQRIVT------- 1326
            ::........||...:.|.|:.|.|..|....   :||. ...|:.:|  :.|.|.||       
Zfish  1106 YKVTGLTSLTTYALQVAAVTQAGVGASTSSTISTGLPPELPGAPSNLVISNISPRSVTIQFSPGS 1170

  Fly  1327 -------------------------PWK-----------EHLELP--------------CRKVG- 1340
                                     .||           :.||:|              ...|| 
Zfish  1171 DGKTEISKWIVEGQVVIVGEEEKEAEWKVLYERDSPPASDTLEIPNLIPFTQYRFRMKQVNIVGS 1235

  Fly  1341 -------------------APAPVTI-----------W----------------------RQDGH 1353
                               ||..:.:           |                      |.||.
Zfish  1236 SPFSESSRLMQTLQSSPDVAPTELVVFSASETSLRIRWEPLPEAAYNGNPESVGYRVRAQRADGF 1300

  Fly  1354 ---NMET-----SARKTI--AKNGTLYMKECQASDA---GNYTCSV-------------EN---- 1388
               .|||     |...|:  .:..|.|....||.::   |.::..|             ||    
Zfish  1301 GQPRMETVSDRLSCEVTVEGLEEWTDYELSIQAFNSIGPGPWSSHVLGKTKESVPSGAPENVSAE 1365

  Fly  1389 ---------TWG--------------------KDE-------------------------IVYNI 1399
                     |||                    ||.                         .||.|
Zfish  1366 AMSSTSVLVTWGSVPEHQKNGHILGYKVLYREKDSDRAPQAHLVNGNQTHMLLLRNLSKFTVYEI 1430

  Fly  1400 VVKV-------PPEAP---------------NLTVINAYTDSLLLEWMDNSHGGSPILGYVINYK 1442
            .|..       ||..|               .|........|:.:.|...|.....|:||.|:|:
Zfish  1431 QVLAFTRVGDGPPSLPPTAERTKDDVPGPPVRLMFPEVRLSSVRVVWQPPSEPNGIIMGYQISYR 1495

  Fly  1443 RDNGD---WEELQVDSKTTSHLLTNLWCGTRYQLYITAYNKIGTGLPCD--IVNSYTKGNPPVQP 1502
            .|..|   :..::|.|......:|.|...:.|...|||....|.| |.|  ||.:..|...|..|
Zfish  1496 LDINDPNKFTTVEVGSNARQFTVTGLMPESAYVFQITARTLQGWG-PADEAIVITTEKRERPQAP 1559

  Fly  1503 KHSQMITNNSTSVTC---WLDSWGDGGCGILYFMIESRVYGRSSWAVVSNHIPPTERIYTVSDLV 1564
            :...:......|...   |: :.|||...:.||.:::.......|...::.||.....:.|..|.
Zfish  1560 RRLTVPQKGVESYKLRLHWM-AGGDGSSPVRYFTLQTLELPDGDWKTHTSSIPHNNSSWEVDRLK 1623

  Fly  1565 PGTKYQLKVTAHNNAGSTTAIYNFTTLSTQGVIYNNDHSTPVSHLSDLPFYANFKLLLPICFSLL 1629
            |.|.|:.::.|.|:.|.:..               :..:.||:.|.|:|..|...||:....:..
Zfish  1624 PYTSYKFRMMATNDVGDSAF---------------SKETEPVTTLQDVPGEAPVILLVKPSTTTS 1673

  Fly  1630 MLL------------ALIGAALFLRKRKLASQARLASSSMSESPSLANLQNKQNRDQQYLAVRCN 1682
            :::            .|:|..::.|                |.||.:|.:..|:.:|..:::...
Zfish  1674 VIVQWQPPAEGTVNGILVGYRVYYR----------------ELPSESNPKVVQSTNQSTISLEFR 1722

  Fly  1683 PGTSAPRGSNSNDSGSFGKAEGNEYIEDICPYATFQLNKQTYSESSYSGNVYSGPYHSVRGSFVY 1747
             ..|..:..:|.....|...:.::|.........|  |....|.||....|:.|           
Zfish  1723 -AKSTFKTVSSPSLTEFELTQLSKYRRYAIVMTAF--NVVGESPSSAPVEVFVG----------- 1773

  Fly  1748 HDVKPESYHSKEPEYTKVRRKVGRLRD-----PHSESQESDNPG--------STDSEVRKILTLH 1799
                 |:..|..|:..:|:.......|     |..|:|..:..|        ...:|..|.|.|.
Zfish  1774 -----EAAPSVAPQNIQVKSVSSNQLDVEWQPPPVETQNGNIQGYKIHYWEKDRQNETEKELVLF 1833

  Fly  1800 IPIT--EYDTLGSESDNDVSARALNSAKYRAQRDTQDETSSSSETTPTSMTRKSKPPFAARKGGK 1862
            :|.|  ....|.|.:...|...|.|:|                ...|.|..||.:...||     
Zfish  1834 VPETCVHLKNLTSYTSYLVQLSAFNAA----------------GDGPLSTARKGRTLQAA----- 1877

  Fly  1863 PGTSGKRHVRSSSGYSSHN 1881
            || |..|.|.|....||.|
Zfish  1878 PG-SPSRVVFSEVTGSSLN 1895

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Dscam4NP_001261571.1 Ig 31..124 CDD:416386 1/2 (50%)
Ig strand A 32..35 CDD:409353
Ig strand A' 41..45 CDD:409353
Ig strand B 48..57 CDD:409353
Ig strand D 75..78 CDD:409353
Ig strand E 83..88 CDD:409353
Ig strand F 101..109 CDD:409353
Ig strand G 112..124 CDD:409353 1/2 (50%)
Ig 235..326 CDD:416386 21/92 (23%)
Ig strand A 235..238 CDD:409353 0/2 (0%)
Ig strand A' 244..248 CDD:409353 0/3 (0%)
Ig strand B 251..258 CDD:409353 1/6 (17%)
Ig strand C 266..271 CDD:409353 1/4 (25%)
Ig strand C' 276..279 CDD:409353 0/2 (0%)
Ig strand D 285..289 CDD:409353 2/3 (67%)
Ig strand E 292..298 CDD:409353 0/5 (0%)
Ig strand F 305..313 CDD:409353 4/7 (57%)
Ig strand G 316..326 CDD:409353 3/9 (33%)
IgC2_3_Dscam 329..417 CDD:409549 26/115 (23%)
Ig strand B 347..351 CDD:409549 1/4 (25%)
Ig strand C 360..364 CDD:409549 1/3 (33%)
Ig strand E 383..387 CDD:409549 1/3 (33%)
Ig strand F 397..402 CDD:409549 1/4 (25%)
Ig strand G 410..413 CDD:409549 0/2 (0%)
IgI_4_Dscam 422..516 CDD:409548 25/99 (25%)
Ig strand B 439..443 CDD:409548 1/3 (33%)
Ig strand C 452..456 CDD:409548 1/3 (33%)
Ig strand E 482..486 CDD:409548 0/3 (0%)
Ig strand F 496..501 CDD:409548 2/6 (33%)
Ig strand G 509..512 CDD:409548 0/3 (0%)
IgI_5_Dscam 520..607 CDD:409550 22/91 (24%)
Ig strand B 536..540 CDD:409550 0/3 (0%)
Ig strand C 549..553 CDD:409550 1/3 (33%)
Ig strand E 571..575 CDD:409550 0/3 (0%)
Ig strand F 586..591 CDD:409550 1/4 (25%)
Ig strand G 600..603 CDD:409550 0/2 (0%)
Ig 610..703 CDD:416386 29/95 (31%)
Ig strand A 611..613 CDD:409353 0/1 (0%)
Ig strand A' 620..624 CDD:409353 1/3 (33%)
Ig strand B 627..636 CDD:409353 2/8 (25%)
Ig strand C 641..648 CDD:409353 2/6 (33%)
Ig strand C' 650..652 CDD:409353 1/1 (100%)
Ig strand D 659..664 CDD:409353 1/4 (25%)
Ig strand E 668..675 CDD:409353 3/6 (50%)
Ig strand F 682..690 CDD:409353 6/7 (86%)
Ig strand G 693..702 CDD:409353 3/8 (38%)
IgI_7_Dscam 706..801 CDD:409546 12/96 (13%)
Ig strand B 724..728 CDD:409546 1/3 (33%)
Ig strand C 737..741 CDD:409546 1/5 (20%)
Ig strand E 766..770 CDD:409546 0/3 (0%)
Ig strand F 780..785 CDD:409546 0/4 (0%)
Ig strand G 794..797 CDD:409546 0/2 (0%)
Ig 818..904 CDD:416386 16/85 (19%)
putative Ig strand B 820..827 CDD:409353 1/6 (17%)
putative Ig strand C 835..841 CDD:409353 0/5 (0%)
putative Ig strand C' 853..856 CDD:409353 0/2 (0%)
putative Ig strand D 862..866 CDD:409353 0/3 (0%)
putative Ig strand E 868..874 CDD:409353 2/5 (40%)
putative Ig strand F 881..889 CDD:409353 3/7 (43%)
putative Ig strand G 892..902 CDD:409353 4/9 (44%)
FN3 906..999 CDD:238020 30/103 (29%)
FN3 1006..1110 CDD:238020 29/106 (27%)
fn3 1117..1203 CDD:394996 30/94 (32%)
FN3 1215..1307 CDD:238020 23/94 (24%)
Ig <1334..1401 CDD:416386 30/217 (14%)
Ig strand C 1345..1349 CDD:409353 1/36 (3%)
Ig strand D 1363..1366 CDD:409353 0/4 (0%)
Ig strand E 1367..1372 CDD:409353 2/4 (50%)
Ig strand F 1380..1388 CDD:409353 2/20 (10%)
Ig strand G 1394..1401 CDD:409353 3/31 (10%)
FN3 1405..1494 CDD:238020 27/108 (25%)
FN3 1499..1580 CDD:238020 19/83 (23%)
sdk1bXP_017211454.1 None
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.910

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