DRSC/TRiP Functional Genomics Resources

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Protein Alignment Dscam4 and ptprq

DIOPT Version :9

Sequence 1:NP_001261571.1 Gene:Dscam4 / 2769008 FlyBaseID:FBgn0263219 Length:1935 Species:Drosophila melanogaster
Sequence 2:XP_021323628.1 Gene:ptprq / 555426 ZFINID:ZDB-GENE-050419-183 Length:2896 Species:Danio rerio


Alignment Length:2016 Identity:415/2016 - (20%)
Similarity:678/2016 - (33%) Gaps:645/2016 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   163 WVQDTG------MHLYPN-------TDIGGKYTVLSNGELYINNAGPNDAYKSYTCRTVNRLTGE 214
            |:...|      :.|||:       ||     |..:|.:..:::..|.   .|||. |||.:...
Zfish   402 WLASPGCEKTYQVQLYPDHGNINITTD-----TADNNVQAQVSSVTPG---TSYTV-TVNAVASS 457

  Fly   215 VQISTYPGRIIVT----------EPKGMVQPRINVEKHSMRHVVLNGQTTLPCIAQGH------- 262
             ..|:...||:||          :|:|        |:.....::|:.:..:|.....|       
Zfish   458 -GFSSPVSRILVTTIESLPAAPSKPEG--------ERVGSTGILLSWRMPMPLDPSIHSFVIRYK 513

  Fly   263 -----PVPTYRWFKEENEQL-LPLQLSERITIVSAGLLKITKARLEDSGKYLCWVNNTAGEETIQ 321
                 |.|:   |.|..:.| :|..|...:|..:...:|:...             |.||.....
Zfish   514 EMCPYPDPS---FTEITKSLDIPETLLNTLTPGATYNIKVAAV-------------NKAGVGPFS 562

  Fly   322 VSL---TVTAP------LTAHLQPQVQTVDV----------------------------DKDAQF 349
            .||   |..||      |||..:.....:..                            .|:...
Zfish   563 QSLYYKTAEAPPGLVSNLTAFAEDHTSVIVTWFLPVRINGLITKFAVKVKHARTGQIVRTKELNA 627

  Fly   350 QCIVSGHPVH-----DVNWLHDGKPILRDNRVEILTD-----------PPRLI--------IKKV 390
            :.|::|...|     |:  |..|.|  ..::...||.           ||..|        |.::
Zfish   628 EDIMNGALPHCNDAADI--LSRGTP--SPSQTSQLTSAVLPPITLSAVPPASIWSVPISVKIDEL 688

  Fly   391 QKEDPGMYQ--CFVSNEWEQIQSTAELQLGDASPELLYWFSEQTLQPGPTVSLKCVATGNPLPQF 453
            :...|.:::  .|.|:...||.||. :::.:|:||          .|...|.|:.:.:.:  ...
Zfish   689 RPYTPYVFEVSAFTSDGEGQIASTM-VRMPEAAPE----------DPPQNVVLRNITSKS--VSL 740

  Fly   454 TWSLDGFPIPDSSRFLVGQYVTIHDDVISHVNISNVKEEDGGEYTCTAQNAIGKVSHSAKVN--- 515
            ||        :..:.:.|::                      .|.....::.|.:|.::.::   
Zfish   741 TW--------EPPKIITGRF----------------------SYVIQLHSSEGLISENSTIDQMF 775

  Fly   516 IY-GLP-----YIREMPKITGISGSDLI--------VKCPVAGY-----------PIDKIHWER- 554
            || ||.     ||..|.|..|.:|...:        |.|.|..|           .:..:..|. 
Zfish   776 IYTGLTPYTTYYIHVMAKSAGAAGPAAVINITTLAEVHCKVCSYLCVFISMSAPSAVSLLKAEAV 840

  Fly   555 DGQTLPINRRQRAYNNG------TLIIEQLQRLEDAGTYTCMAQNKQKQTSRRNVEIQVLVPPKI 613
            |..::.::.|.....||      .|::.....::|   .|...||              |:.|  
Zfish   841 DSTSVRLSWRSPIQPNGLITHYRILVLYHDTLVQD---ITLRGQN--------------LISP-- 886

  Fly   614 MPIQAMTNMLREGMRAAISCQILEGDLPVSFRWERNGKPLIGTGNEVFRRLDEYSASLVIEHISS 678
                     ||                       ||.:.|..|...||......:.|.    :..
Zfish   887 ---------LR-----------------------RNARSLDFTTESVFTLTSHETFST----LGR 915

  Fly   679 DHSGNYTCIASNVAGTERFTVPLTVNVPPKWIL---EPKDSSAQAGADVLLHCQSSGYP--TPTI 738
            |.:...|...|.:..|     |.|.:.||.|:.   :..|:|.|...|.:....::.:|  ||. 
Zfish   916 DFTNTDTEAPSALPLT-----PSTPHTPPPWLTVTHDRTDASVQTQTDAVTEDLTTEHPPVTPG- 974

  Fly   739 TWKKAIGPTPGE--------YKDFLYEPT-----------VQLFP-----------NGTIFFKKI 773
            |.:.::..:|..        ..|...:.|           :::.|           ..|...:::
Zfish   975 TDQSSVNISPSHPHRVTRSTGSDSTQQETNPPISAATTVGIEILPATEVSADLSSDQITHVVRRL 1039

  Fly   774 SKESQGHFLCEAKNNIGSGVSKVIFLKVN--VPAHFQTKTKQISVAKGKQVHVQCNVQGDNPIDF 836
            |..::..|...|||.||.|.|..:.:|.|  ||:..|      :|:..........|..:.|::.
Zfish  1040 SPFTEYKFSVSAKNIIGEGPSTEVTVKTNEQVPSSVQ------NVSYQNLSSTSIRVSWEPPLNP 1098

  Fly   837 KWKIQATQQYLDESLDSRYTIRDQVLDDGMVSELGI----SHTYRQDTGIYICQASNAFGQDEMS 897
            ..||.....|. ::|.:...:| |:.|.......|:    |:..|       ..||.|.|:..::
Zfish  1099 NGKITHYAVYA-QNLLTNQELR-QMTDTTTAVLTGLDKYSSYKVR-------VAASTAVGESPLT 1154

  Fly   898 IQ-----LIVQEVPEQ-PKNLRINSQQSRSLQLTWSQPFAGNSPIEEYHIYYKQISDIWQNAEHL 956
            .:     :.:::||:. |:.|.|....|.:..|:||.|...|..|..|.|.|  .:..:.|..:.
Zfish  1155 NEDYIYVVTLEDVPDSPPRGLTIVKTTSSTATLSWSPPEKPNGIIRMYEISY--TNGTYSNTVNS 1217

  Fly   957 TIAGAQTVINIQQLRPAKAYHIRMSAENKLGASE-FSEVVQVTTLEEVPSGPPLAVRAEPKSSTE 1020
            |.|.|    .::.|:|...|::.:.|...||..| .||.:|:.:.|:||..||..:..|...|:.
Zfish  1218 TSASA----TLRYLKPHTHYNVTVRAFTLLGHGEQISETLQMLSGEDVPGSPPYDLSYESIGSSS 1278

  Fly  1021 IFVTWDAPERDHWNGILLGYYVGYQMSLTPEDKEVNPTQGFSFKTVEVRSHFGGETVLANLNKFT 1085
            :.|:|..|...  ||::|.|.|.|.          |.||..:..|     |. ...||:||.|:.
Zfish  1279 VNVSWSPPLLA--NGVILFYNVEYW----------NATQSLNQTT-----HM-PYIVLSNLRKYA 1325

  Fly  1086 QYHVIVQAYTSQGSGPPSKEIA-VQTMED----------VPSSPPESPQCDVLGSTSIYITWSPP 1139
            .|.:.|||.|..|.|..:.||. :.|:||          ||||||:......|..|.:.::|..|
Zfish  1326 HYRISVQAATQVGMGNHTSEILNITTLEDGECLLCFSQTVPSSPPKFLIARKLSDTEVELSWEAP 1390

  Fly  1140 DIDGQNGKIKGYKVFYISVDELYETDPEVVKSTNQYVTIENLRKYTNYTVWVLAYTKVGDGMKTK 1204
              :..|.:|    ::||.  .::....|.|.:..:...:.::.....|...|.::|::|||....
Zfish  1391 --EEANSEI----LYYIV--RVWNLSTEFVANVTETSVVVSVDGPGQYNASVSSWTRLGDGGLLI 1447

  Fly  1205 PFYCRTHEDVPS-APQAIKAIPASSSKIIISWLPPDLPNGDITGYTFYMSMLEGGREEGT----- 1263
            .....|.|..|| .||.:.....:.|.:.:||.||:.|||.|..||.|.:   ....|.|     
Zfish  1448 YITFSTIESAPSDPPQDVVYTLLTISTVRLSWRPPNEPNGIIQYYTIYYT---DNNTEYTERVPG 1509

  Fly  1264 --HKRLLGPFVEMHETVRTQESATYQFWLTASTKMGEG----------------------EKTQV 1304
              |:.||...         |....|..|:::||.:|:|                      .:.|:
Zfish  1510 SEHQLLLSDL---------QAGQDYSVWMSSSTSVGDGGLFSPSLNFTTLEDGQSPHSLRGEAQL 1565

  Fly  1305 VTVPPNN--------KVP--------ARIVSFSQRIVTPWKEHLE--------LPCRKVGAPAPV 1345
            .|..|.:        |:|        |.|.| |..:|..|...||        |..::.|...| 
Zfish  1566 CTTFPTDYTSKKIALKLPSGPVHNLSATIYS-STAVVISWDPPLEPNGRVYYQLSLQEAGITHP- 1628

  Fly  1346 TIWRQDGHNMETSARKTIAK--NGTLYM---------------KECQASDAGNYTCSVENTWGKD 1393
                    ::..:...||.|  ..|:|:               ....|..|.|:|..:.....:|
Zfish  1629 --------SINRTVNMTITKTTTDTIYLFTKLRKYFPYIINVTPATSAGSAVNHTTMLHLRTDED 1685

  Fly  1394 EIVYNIVVKVPPEAPNLTVI--NAYTDSLLLEWMDNSHGGSPILGYVINYKRDNGDWEELQVDSK 1456
                      .|.:|.|:..  |..:.|:.:.|.........|:.|.:|          ||..|.
Zfish  1686 ----------VPSSPPLSGSNKNLSSTSIQVSWFPPVEANGEIIEYAVN----------LQGPST 1730

  Fly  1457 TT------SHL-LTNLWCGTRYQLYITAYNKIGTGLPCDIVNSYTKGNPPVQPKHSQMITNNSTS 1514
            :.      :|| |:.|...|.|.|.|.|..::|||.|. :::.:|....|:.|..:..|.|: |:
Zfish  1731 SNKNYTSETHLVLSELTPFTPYNLSIAAVTRVGTGPPV-VLSLHTDEAGPMSPPRNLTIFNH-TA 1793

  Fly  1515 VTCWLDSWGDG----------GCGILYFMIESRVYGRSSWAVVSNHIPPTERIYTVSDLVPGTKY 1569
            .:.|| .|...          |..||....:|..|..||.|.....:         ....|...|
Zfish  1794 NSVWL-QWEPSPEPNGVVQLYGFRILELNTDSFRYQNSSDASTQAEL---------GGFKPHNSY 1848

  Fly  1570 QLKVTAHNNAGSTTAIYNFTTLSTQGVIYNNDHSTPVSHLS-------------DLPFYANFKLL 1621
            ::.|.....||:... |:...|.|.    |...|..|.:||             :||.:.|.::|
Zfish  1849 EISVCTFTRAGNGDQ-YSLPVLFTT----NESVSDAVGNLSCSGLDWDSVYMEWELPDHPNGEIL 1908

  Fly  1622 LPICFSLLMLLALIGAALFLRKRKLASQARLASSSMSESPSLANLQNKQNRDQQYLAVRCNPGTS 1686
            .                ..:|...|..:|.....:.:.:.:|..|.     ...:..:......|
Zfish  1909 Y----------------YLIRSGDLEDEAHPVVLTHTVAHTLTGLS-----PHAFYLITVAAVNS 1952

  Fly  1687 APRGSNSNDSG-----SFGKAEGNEYIEDICPYATFQLNKQTYSESSYSGNVYSGPYHSVRGSFV 1746
            |..|..:|.|.     |....:|..|:    |:                 ||.|  :.:|:..|.
Zfish  1953 AGVGEEANCSAHTPPESVVHKKGVNYV----PF-----------------NVES--FQAVQNCFF 1994

  Fly  1747 YHDVKPE----SYHSKEPEYTKVRRKVGRLRDPHSESQE--------SDNPGSTDSEVRKILT-- 1797
            :.||...    |.||                ..||::|:        |..||.:.|.....:|  
Zfish  1995 FCDVLASQSFLSLHS----------------SLHSQTQKIQHCFLSPSAVPGPSHSLTVTDVTSD 2043

  Fly  1798 ---------LHIPITEYDTLGSESDNDVSARALNSAKYRAQRDTQDETSS------SSETTPTSM 1847
                     :|:|       |.....:|....|:....|.|:..:....:      ..|||..::
Zfish  2044 SVSVSWQRPVHVP-------GLLQGYNVEIEQLSRNCERQQQQVESCMEAQILEWVEGETTRATL 2101

  Fly  1848 T 1848
            |
Zfish  2102 T 2102

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Dscam4NP_001261571.1 Ig 31..124 CDD:416386
Ig strand A 32..35 CDD:409353
Ig strand A' 41..45 CDD:409353
Ig strand B 48..57 CDD:409353
Ig strand D 75..78 CDD:409353
Ig strand E 83..88 CDD:409353
Ig strand F 101..109 CDD:409353
Ig strand G 112..124 CDD:409353
Ig 235..326 CDD:416386 18/106 (17%)
Ig strand A 235..238 CDD:409353 0/2 (0%)
Ig strand A' 244..248 CDD:409353 0/3 (0%)
Ig strand B 251..258 CDD:409353 1/6 (17%)
Ig strand C 266..271 CDD:409353 0/4 (0%)
Ig strand C' 276..279 CDD:409353 1/3 (33%)
Ig strand D 285..289 CDD:409353 1/3 (33%)
Ig strand E 292..298 CDD:409353 1/5 (20%)
Ig strand F 305..313 CDD:409353 0/7 (0%)
Ig strand G 316..326 CDD:409353 3/12 (25%)
IgC2_3_Dscam 329..417 CDD:409549 25/147 (17%)
Ig strand B 347..351 CDD:409549 0/3 (0%)
Ig strand C 360..364 CDD:409549 1/3 (33%)
Ig strand E 383..387 CDD:409549 2/11 (18%)
Ig strand F 397..402 CDD:409549 0/6 (0%)
Ig strand G 410..413 CDD:409549 1/2 (50%)
IgI_4_Dscam 422..516 CDD:409548 11/96 (11%)
Ig strand B 439..443 CDD:409548 2/3 (67%)
Ig strand C 452..456 CDD:409548 1/3 (33%)
Ig strand E 482..486 CDD:409548 0/3 (0%)
Ig strand F 496..501 CDD:409548 1/4 (25%)
Ig strand G 509..512 CDD:409548 1/2 (50%)
IgI_5_Dscam 520..607 CDD:409550 20/117 (17%)
Ig strand B 536..540 CDD:409550 1/11 (9%)
Ig strand C 549..553 CDD:409550 0/3 (0%)
Ig strand E 571..575 CDD:409550 2/9 (22%)
Ig strand F 586..591 CDD:409550 1/4 (25%)
Ig strand G 600..603 CDD:409550 0/2 (0%)
Ig 610..703 CDD:416386 15/92 (16%)
Ig strand A 611..613 CDD:409353 1/1 (100%)
Ig strand A' 620..624 CDD:409353 0/3 (0%)
Ig strand B 627..636 CDD:409353 0/8 (0%)
Ig strand C 641..648 CDD:409353 0/6 (0%)
Ig strand C' 650..652 CDD:409353 0/1 (0%)
Ig strand D 659..664 CDD:409353 2/4 (50%)
Ig strand E 668..675 CDD:409353 1/6 (17%)
Ig strand F 682..690 CDD:409353 1/7 (14%)
Ig strand G 693..702 CDD:409353 2/8 (25%)
IgI_7_Dscam 706..801 CDD:409546 25/129 (19%)
Ig strand B 724..728 CDD:409546 0/3 (0%)
Ig strand C 737..741 CDD:409546 1/3 (33%)
Ig strand E 766..770 CDD:409546 1/3 (33%)
Ig strand F 780..785 CDD:409546 1/4 (25%)
Ig strand G 794..797 CDD:409546 1/2 (50%)
Ig 818..904 CDD:416386 16/94 (17%)
putative Ig strand B 820..827 CDD:409353 0/6 (0%)
putative Ig strand C 835..841 CDD:409353 1/5 (20%)
putative Ig strand C' 853..856 CDD:409353 0/2 (0%)
putative Ig strand D 862..866 CDD:409353 1/3 (33%)
putative Ig strand E 868..874 CDD:409353 1/9 (11%)
putative Ig strand F 881..889 CDD:409353 1/7 (14%)
putative Ig strand G 892..902 CDD:409353 1/14 (7%)
FN3 906..999 CDD:238020 28/94 (30%)
FN3 1006..1110 CDD:238020 32/104 (31%)
fn3 1117..1203 CDD:394996 19/85 (22%)
FN3 1215..1307 CDD:238020 29/121 (24%)
Ig <1334..1401 CDD:416386 13/83 (16%)
Ig strand C 1345..1349 CDD:409353 0/3 (0%)
Ig strand D 1363..1366 CDD:409353 2/4 (50%)
Ig strand E 1367..1372 CDD:409353 2/19 (11%)
Ig strand F 1380..1388 CDD:409353 2/7 (29%)
Ig strand G 1394..1401 CDD:409353 0/6 (0%)
FN3 1405..1494 CDD:238020 25/97 (26%)
FN3 1499..1580 CDD:238020 19/90 (21%)
ptprqXP_021323628.1 fn3 209..278 CDD:306538
FN3 301..363 CDD:328772
FN3 382..470 CDD:238020 20/77 (26%)
FN3 475..569 CDD:238020 20/117 (17%)
FN3 723..808 CDD:238020 19/116 (16%)
FN3 829..>864 CDD:238020 5/34 (15%)
FN3 <1033..1067 CDD:238020 10/33 (30%)
FN3 1072..1161 CDD:238020 19/103 (18%)
fn3 1170..1241 CDD:306538 21/76 (28%)
fn3 1264..1340 CDD:306538 29/93 (31%)
fn3 1368..>1410 CDD:306538 11/49 (22%)
FN3 1460..1549 CDD:238020 26/100 (26%)
FN3 1585..1670 CDD:214495 17/94 (18%)
FN3 1697..1768 CDD:238020 21/80 (26%)
FN3 1781..1872 CDD:238020 22/102 (22%)
fn3 1878..1958 CDD:306538 15/100 (15%)
FN3 2029..2133 CDD:238020 15/81 (19%)
FN3 2141..2235 CDD:238020
FN3 2242..2338 CDD:238020
UP_III_II 2354..>2491 CDD:297589
PTPc 2599..2855 CDD:214550
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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