DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Dscam4 and Dscam2

DIOPT Version :9

Sequence 1:NP_001261571.1 Gene:Dscam4 / 2769008 FlyBaseID:FBgn0263219 Length:1935 Species:Drosophila melanogaster
Sequence 2:NP_001261500.1 Gene:Dscam2 / 38788 FlyBaseID:FBgn0265296 Length:2101 Species:Drosophila melanogaster


Alignment Length:1974 Identity:737/1974 - (37%)
Similarity:1105/1974 - (55%) Gaps:152/1974 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MDLHSLFKAILILYVIRAETSQFVNGLDLQGPIFLHEPPHRVEFSNNSGGLIECSGHGSPPPEVE 65
            |.:.|.|..||:|..:....|:.... .|:||.|:.|||.||||||:|||.::||..|||.|.|:
  Fly     1 MWISSRFFVILLLLNLDNTCSEPFEA-HLRGPGFVMEPPGRVEFSNSSGGWLDCSASGSPQPTVD 64

  Fly    66 W-----TPIPPQQDMVFQLSNGSMMFYPFTAEKYRHEVHATVYRCKLRNLVGTVLSREVHVRGVV 125
            |     :.:.....:...|.||:::..||.|..|..:||.|:|||...|.||.::||:|.||.||
  Fly    65 WVHADGSAVTEIHGVRRVLRNGTLVLMPFAAAAYHQDVHNTIYRCIASNSVGRIVSRDVQVRAVV 129

  Fly   126 NQKYAVQVHDEYVMTGNTAVLKCQVPSYMSEFVLVTAWVQDTGMHLYPNTDIGGKYTVLSNGELY 190
            .|.|.|.|.......|.||:|:|.||:::.|.|.|.:||.:..:::||:....||:.:|..|||.
  Fly   130 AQAYKVDVEVLSAARGCTAILRCVVPTFVKELVRVVSWVHEPAIYIYPSLQGDGKFHLLPTGELL 194

  Fly   191 INNAGPNDAYKSYTCRTVNRLTGEVQISTYPGRIIVTEPKGMVQPRINVEKHSMRHVVLNGQTTL 255
            |:|...:|..:|:.||:::|||.:|.:|: |.|:.:...:|::.|.: ||..:...|..:....|
  Fly   195 IHNLQESDESQSFRCRSMHRLTRQVVVSS-PTRLRINSHRGIISPSV-VEHTAHVQVSQDEGAVL 257

  Fly   256 PCIAQGHPVPTYRWFKEENEQLLPLQLSERITIVSAGLLKITKARLEDSGKYLCWVNNTAGEETI 320
            .|:|||.|.|.|.||.......||:....|:.::.. :|.|.....||||.|.|...|..||.:.
  Fly   258 LCVAQGCPSPEYSWFTHNGAGPLPVLSGPRVRLLGP-ILAIEAVTGEDSGVYKCTAGNVGGEASA 321

  Fly   321 QVSLTVTAPLTAHLQPQVQTVDVDKDAQFQCIV--SGHPV--HDVNWLHDGKPILRDNRVEILTD 381
            ::.|||..|:...:.|.|.:|.:...|:|:|:|  :|.||  .::.|..||:.:....|||    
  Fly   322 ELRLTVATPIQVEISPNVLSVHMGGTAEFRCLVTSNGSPVGMQNILWYKDGRQLPSSGRVE---- 382

  Fly   382 PPRLIIKKVQKEDPGMYQCFVSN-EWEQIQSTAELQLGDASPELLYWFSEQTLQPGPTVSLKCVA 445
             ..|::.:|.:|:.|||||.|.. |.:..|:|||||||||.|.|||.|.||||||||.|||||.|
  Fly   383 -DTLVVPRVSRENRGMYQCVVRRPEGDTFQATAELQLGDAPPVLLYSFIEQTLQPGPAVSLKCSA 446

  Fly   446 TGNPLPQFTWSLDGFPIPDSSRFLVGQYVTIHDDVISHVNISNVKEEDGGEYTCTAQNAIGKVSH 510
            .|||.||.:|:|||||:|.:.||::|||:|:|.|||||||||:|..||||||.|.|:|..|:|.|
  Fly   447 AGNPTPQISWTLDGFPLPSNGRFMIGQYITVHGDVISHVNISHVMVEDGGEYACIAENRAGRVQH 511

  Fly   511 SAKVNIYGLPYIREMPKITGISGSDLIVKCPVAGYPIDKIHWERDGQTLPINRRQRAYNNGTLII 575
            :|::|||||||||.:||:|.:||..|.:|||||||||::|||||.|:.||.:.|||...:|:|.|
  Fly   512 AARLNIYGLPYIRLIPKVTAVSGETLNLKCPVAGYPIEEIHWERGGRELPDDIRQRVQPDGSLTI 576

  Fly   576 EQLQRLEDAGTYTCMAQNKQKQTSRRNVEIQVLVPPKIMPIQAMTNMLREGMRAAISCQILEGDL 640
            ..:|:..|:|.|||.|:|||..::||:.|:.|:||||:.|.|.....|..|.||:::|.:::|||
  Fly   577 SPVQKNSDSGVYTCWARNKQGHSARRSGEVTVIVPPKLSPFQTNILQLNMGDRASLTCSVVKGDL 641

  Fly   641 PVSFRWERNGKPLIGTGNEVFRRLDEYSASLVIEHISSDHSGNYTCIASNVAGTERFTVPLTVNV 705
            |::..|.::|:|:..|.:...:::|:|::.||||::.|||:|||:|:..|.|.....:..|.|||
  Fly   642 PLTINWRKDGRPIDPTQHMSVKQVDQYNSILVIENLGSDHTGNYSCVVRNSAAEVENSQALLVNV 706

  Fly   706 PPKWILEPKDSSAQAGADVLLHCQSSGYPTPTITWKKAIGPTPGEYKDFLYEPTVQLFPNGTIFF 770
            ||:||:||.|::.:....::||||:.|.|||:|.||||.|...|||::....|..:|..||::..
  Fly   707 PPRWIVEPVDANVERNRHIMLHCQAQGVPTPSIVWKKATGSKSGEYEEVRERPFTKLLGNGSLLL 771

  Fly   771 KKISKESQGHFLCEAKNNIGSGVSKVIFLKVNVPAHFQTKTKQISVAKGKQVHVQCNVQGDNPID 835
            :.:.::.:|.:||:|.|.||:|:.|||.||||...:|.:.::.:.|.||....:||.|.||.||:
  Fly   772 QHVKEDREGFYLCQANNGIGTGIGKVIQLKVNSSPYFSSTSRSVMVKKGDTALLQCAVSGDKPIN 836

  Fly   836 FKWKIQATQQYLDESLDSRYTIRDQVLDDGMVSELGISHTYRQDTGIYICQASNAFGQDEMSIQL 900
            ..| :::.:..|:.|.:.:.:::.:...||:.:||.|......|:|.|.|:|||.:|.|:..:||
  Fly   837 IVW-MRSGKNTLNPSTNYKISVKQEATPDGVSAELQIRTVDATDSGPYFCRASNLYGNDQQLVQL 900

  Fly   901 IVQEVPEQPKNLRINSQQSRSLQLTWSQPFAGNSPIEEYHIYYKQIS---------DIWQNAE-- 954
            .|||.|..|..|......|||:.:.|.....|...:.:|.:.:::..         |.||..|  
  Fly   901 QVQEPPLPPSVLEAAMISSRSVNIKWQPKTLGTGDVTKYIVEFREADHSLPPALFVDQWQQIEVK 965

  Fly   955 ---HLTIAGAQTVINIQQLRPAKAYHIRMSAENKLGASEFSEVVQVTTLEEVPSGPPLAVRAEPK 1016
               |....       |:.|:||..|..|:.||...|.|..|:.:.|.|..:.|:||||::.|.|.
  Fly   966 DPPHFNAM-------IENLKPATRYAFRVIAEGSAGRSAPSQELIVRTEPQRPAGPPLSLSARPL 1023

  Fly  1017 SSTEIFVTWDAPERDHWNGILLGYYVGYQMSLTPEDKEVNPTQGFSFKTVEVRSHFG-GETVLAN 1080
            ||||:.::|.||..:..:|.:.||.|||::|       .:....::|.:|......| ||.:|:.
  Fly  1024 SSTELLISWVAPLPELRHGDIQGYNVGYKLS-------SSGNTAYNFTSVSGDGDGGNGELLLSG 1081

  Fly  1081 LNKFTQYHVIVQAYTSQGSGPPSKEIAVQTMEDVPSSPPESPQCDVLGSTSIYITWSPPDIDGQN 1145
            |.||.:|.|:|||:...|.||.|:..|.||||||||.|||..:|..|.|.|:.::|.||.|...|
  Fly  1082 LAKFARYTVVVQAFNQVGPGPLSEPTAAQTMEDVPSRPPEDVRCAALSSQSLQVSWQPPPIYHTN 1146

  Fly  1146 GKIKGYK-VFYISVDELYETDPEVV--KSTNQYVTIENLRKYTNYTVWVLAYTKVGDGMKTKPFY 1207
            |.::||| :|...:|::..:..||.  |:|...:.:..|||||||::.|||:|::|||:.:||.:
  Fly  1147 GLLQGYKLIFEPIIDDIQPSKDEVESRKTTALTMVLTGLRKYTNYSIQVLAHTRMGDGVVSKPLF 1211

  Fly  1208 CRTHEDVPSAPQAIKAIPASSSKIIISWLPPDLPNGDITGYTFYMSMLEGGREEGTHKRLLGPFV 1272
            |.:.||||.||..||.:.:||..:.||||||:.|||.||.|:.|..::.|..|....||.|....
  Fly  1212 CHSEEDVPEAPADIKVVSSSSQSLYISWLPPNEPNGVITKYSLYTRVVNGREELNNEKRSLPSQQ 1276

  Fly  1273 EMHETVRTQESATYQFWLTASTKMGEGEKTQVVTVPPNNKVPARIVSFSQRIVTPWKEHLELPCR 1337
            ..:|.........||||:||||::|||:.::|.:....|::||||:||...:|.||:..:.|||.
  Fly  1277 AYYEAKGLHPHMEYQFWVTASTRVGEGKSSRVSSQITTNRIPARIISFGGPVVRPWRSTVTLPCT 1341

  Fly  1338 KVGAP------APVTIWRQDG-HNMETSARKTIAKNGTLYMKECQASDAGNYTCSVENTWGKDEI 1395
            .||.|      :.|.: ||.| ||.:      :..:|.|.:...|.:|.|||:|.|:|..|.|.:
  Fly  1342 AVGKPKREWFKSDVAL-RQGGLHNSQ------LLDSGDLIISSLQLADGGNYSCQVDNGIGTDRL 1399

  Fly  1396 VYNIVVKVPPEAPNLTVINAYTDSLLLEWMDNSHGGSPILGYVINYKRDNGDWEELQVDSKTTSH 1460
            .:.::|:|||.||.|.|.:|.:.|:|:.|.....|.:||.||.:.|:|.||:.:|:|:....:||
  Fly  1400 THTLIVQVPPTAPVLYVTSATSSSILMHWKCGFTGNAPITGYTLFYRRANGNTDEMQLSRHASSH 1464

  Fly  1461 LLTNLWCGTRYQLYITAYNKIGTGLPCDIVNSYTKGNPPVQPKHSQMITNNSTSVTCWLDSWGDG 1525
            .|..|.||:.||::::|.||:||.....|::..|:|..|..|..:.::..||||:...|.||.|.
  Fly  1465 ELKGLMCGSTYQIHLSAQNKVGTSPTSTILHVRTQGQSPGHPASTALLAPNSTSLLVRLHSWPDN 1529

  Fly  1526 GCGILYFMIESRVY---GRSSWAVVSNHIPPTERIYTVSDLVPGTKYQLKVTAHNNAGSTTAIYN 1587
            ||.:|||:::.|..   ..:.|.:|||.:.|..|| .:::|.|.|.|||::.|||.||.:.|.:|
  Fly  1530 GCPLLYFVLQYRAVTDDPDAEWVLVSNALKPQRRI-VINNLQPSTLYQLRMEAHNVAGISQAEFN 1593

  Fly  1588 FTTLSTQGVIYNNDHSTP-VSHL----SDLPFYANFKLLLPICFSLLMLLALIGAALFLRKRKLA 1647
            |.||:..|     |...| :.|.    .....:||..||:|...::..:...|...:...:..|.
  Fly  1594 FVTLTKDG-----DPPPPEIMHRGRSGQTTVIFANINLLIPTIAAVSGMFCTIIMIIVCYRHMLK 1653

  Fly  1648 SQARLASSSMSESPSLANLQNKQ--NRDQQYLAVRCNPGTSAPRGSNSNDSGSFGKAEGNEYIED 1710
            :...||..|..:..||.|..|.:  .|::.|..:.        :.|..|:.      :..|..||
  Fly  1654 NAPPLAEQSQIQKESLENRANSEAAQRERYYATIH--------KVSMQNND------KIPETSED 1704

  Fly  1711 ICPYATFQLNKQTYSESSYSGNV----YSGPYHSVRGSFVYHD-VKPESYHSKEPEYTKVRRKVG 1770
            |.|||||||       |...||:    :.||.:::..||:||: ...|...|..|..:|.||:..
  Fly  1705 ISPYATFQL-------SEAGGNMSQPHHGGPANTLLHSFMYHERALAEGCSSPPPAASKNRRRHS 1762

  Fly  1771 RLRDPHSESQESDNPGSTDSEVRKILTLHIPITEYDTLGSESDNDVSARALNSAKYRAQRDTQDE 1835
            |..:|.||..|||....|.|.                  :||.|....:..:|..|...     :
  Fly  1763 RKTEPESEESESDQDQLTSSR------------------TESSNQHEGKIKHSIIYHGA-----Q 1804

  Fly  1836 TSSSSETTPTSMTRKSKPPFAARKGGKPGTSGKRHVRSSSGYSSHNEETTFSISNYPPNYQDH-I 1899
            :|:||:.:|.| .:||.|    |:|             .|.|  |:::..||.:..|.::..: :
  Fly  1805 SSTSSDLSPMS-EQKSLP----RRG-------------RSRY--HHQQYQFSTNTTPRHHNSNKM 1849

  Fly  1900 NPPARFSDANDKTKTQTSPRMRAN 1923
            |.....:.....|.|..:|...:|
  Fly  1850 NNNTTSNTNTTATNTTATPSTSSN 1873

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Dscam4NP_001261571.1 Ig 31..124 CDD:416386 44/97 (45%)
Ig strand A 32..35 CDD:409353 1/2 (50%)
Ig strand A' 41..45 CDD:409353 3/3 (100%)
Ig strand B 48..57 CDD:409353 5/8 (63%)
Ig strand D 75..78 CDD:409353 0/2 (0%)
Ig strand E 83..88 CDD:409353 0/4 (0%)
Ig strand F 101..109 CDD:409353 4/7 (57%)
Ig strand G 112..124 CDD:409353 6/11 (55%)
Ig 235..326 CDD:416386 29/90 (32%)
Ig strand A 235..238 CDD:409353 1/2 (50%)
Ig strand A' 244..248 CDD:409353 0/3 (0%)
Ig strand B 251..258 CDD:409353 1/6 (17%)
Ig strand C 266..271 CDD:409353 2/4 (50%)
Ig strand C' 276..279 CDD:409353 0/2 (0%)
Ig strand D 285..289 CDD:409353 1/3 (33%)
Ig strand E 292..298 CDD:409353 2/5 (40%)
Ig strand F 305..313 CDD:409353 3/7 (43%)
Ig strand G 316..326 CDD:409353 3/9 (33%)
IgC2_3_Dscam 329..417 CDD:409549 32/92 (35%)
Ig strand B 347..351 CDD:409549 2/3 (67%)
Ig strand C 360..364 CDD:409549 0/3 (0%)
Ig strand E 383..387 CDD:409549 1/3 (33%)
Ig strand F 397..402 CDD:409549 4/4 (100%)
Ig strand G 410..413 CDD:409549 1/2 (50%)
IgI_4_Dscam 422..516 CDD:409548 61/93 (66%)
Ig strand B 439..443 CDD:409548 3/3 (100%)
Ig strand C 452..456 CDD:409548 1/3 (33%)
Ig strand E 482..486 CDD:409548 3/3 (100%)
Ig strand F 496..501 CDD:409548 3/4 (75%)
Ig strand G 509..512 CDD:409548 1/2 (50%)
IgI_5_Dscam 520..607 CDD:409550 46/86 (53%)
Ig strand B 536..540 CDD:409550 1/3 (33%)
Ig strand C 549..553 CDD:409550 2/3 (67%)
Ig strand E 571..575 CDD:409550 2/3 (67%)
Ig strand F 586..591 CDD:409550 3/4 (75%)
Ig strand G 600..603 CDD:409550 2/2 (100%)
Ig 610..703 CDD:416386 34/92 (37%)
Ig strand A 611..613 CDD:409353 1/1 (100%)
Ig strand A' 620..624 CDD:409353 0/3 (0%)
Ig strand B 627..636 CDD:409353 3/8 (38%)
Ig strand C 641..648 CDD:409353 2/6 (33%)
Ig strand C' 650..652 CDD:409353 1/1 (100%)
Ig strand D 659..664 CDD:409353 0/4 (0%)
Ig strand E 668..675 CDD:409353 3/6 (50%)
Ig strand F 682..690 CDD:409353 4/7 (57%)
Ig strand G 693..702 CDD:409353 0/8 (0%)
IgI_7_Dscam 706..801 CDD:409546 40/94 (43%)
Ig strand B 724..728 CDD:409546 1/3 (33%)
Ig strand C 737..741 CDD:409546 1/3 (33%)
Ig strand E 766..770 CDD:409546 1/3 (33%)
Ig strand F 780..785 CDD:409546 2/4 (50%)
Ig strand G 794..797 CDD:409546 1/2 (50%)
Ig 818..904 CDD:416386 29/85 (34%)
putative Ig strand B 820..827 CDD:409353 1/6 (17%)
putative Ig strand C 835..841 CDD:409353 1/5 (20%)
putative Ig strand C' 853..856 CDD:409353 0/2 (0%)
putative Ig strand D 862..866 CDD:409353 1/3 (33%)
putative Ig strand E 868..874 CDD:409353 3/5 (60%)
putative Ig strand F 881..889 CDD:409353 4/7 (57%)
putative Ig strand G 892..902 CDD:409353 4/9 (44%)
FN3 906..999 CDD:238020 26/106 (25%)
FN3 1006..1110 CDD:238020 39/104 (38%)
fn3 1117..1203 CDD:394996 36/88 (41%)
FN3 1215..1307 CDD:238020 38/91 (42%)
Ig <1334..1401 CDD:416386 24/73 (33%)
Ig strand C 1345..1349 CDD:409353 1/3 (33%)
Ig strand D 1363..1366 CDD:409353 0/2 (0%)
Ig strand E 1367..1372 CDD:409353 2/4 (50%)
Ig strand F 1380..1388 CDD:409353 5/7 (71%)
Ig strand G 1394..1401 CDD:409353 0/6 (0%)
FN3 1405..1494 CDD:238020 34/88 (39%)
FN3 1499..1580 CDD:238020 32/83 (39%)
Dscam2NP_001261500.1 Ig 51..127 CDD:299845 28/75 (37%)
Ig 138..>203 CDD:299845 22/64 (34%)
I-set 238..327 CDD:254352 29/90 (32%)
Ig 247..327 CDD:299845 26/80 (33%)
I-set 332..418 CDD:254352 31/90 (34%)
IGc2 344..407 CDD:197706 22/67 (33%)
IG_like 432..517 CDD:214653 55/84 (65%)
IGc2 436..507 CDD:197706 47/70 (67%)
I-set 521..610 CDD:254352 47/88 (53%)
IGc2 533..597 CDD:197706 35/63 (56%)
Ig 630..699 CDD:143165 25/68 (37%)
IG_like 714..802 CDD:214653 35/87 (40%)
Ig 725..802 CDD:299845 33/76 (43%)
Ig 823..894 CDD:143165 23/71 (32%)
FN3 906..1006 CDD:238020 26/106 (25%)
FN3 1013..1111 CDD:238020 39/104 (38%)
FN3 1119..1209 CDD:238020 36/89 (40%)
FN3 1219..1313 CDD:238020 38/93 (41%)
Ig 1336..1402 CDD:143165 24/72 (33%)
FN3 1409..1498 CDD:238020 34/88 (39%)
FN3 1515..1588 CDD:238020 32/73 (44%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 135 1.000 Domainoid score I4915
eggNOG 1 0.900 - - E1_KOG3510
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 917 1.000 Inparanoid score I353
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D10185at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - mtm6394
orthoMCL 1 0.900 - - OOG6_101656
Panther 1 1.100 - - P PTHR10075
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X1391
98.870

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