DRSC/TRiP Functional Genomics Resources

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Protein Alignment Dscam4 and ImpL2

DIOPT Version :9

Sequence 1:NP_001261571.1 Gene:Dscam4 / 2769008 FlyBaseID:FBgn0263219 Length:1935 Species:Drosophila melanogaster
Sequence 2:NP_728961.2 Gene:ImpL2 / 38513 FlyBaseID:FBgn0001257 Length:267 Species:Drosophila melanogaster


Alignment Length:355 Identity:73/355 - (20%)
Similarity:112/355 - (31%) Gaps:141/355 - (39%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MDLHSLFKAILILYVIRAETSQFVNGLDLQGPI----------------------FLHEPPHRVE 43
            |:||....|:|:...|.....:.|:.:|....:                      |...||.:::
  Fly     5 MNLHVCALALLLFGSIATVRGRAVDLVDDSNDVDNSIEAEEEKPRNRAFEADWLKFTKTPPTKLQ 69

  Fly    44 FSNNSGGLIECSGHGSPPPEVEWTPIPPQQDMVFQLSNGSMMFYPFTAEKYRHEVHATVYRCKLR 108
            .::.:...|.|...||..|.::|                                          
  Fly    70 QADGATIEIVCEMMGSQVPSIQW------------------------------------------ 92

  Fly   109 NLVGTVLSREVHV-RGVVNQKYAVQVHDEYVMTGNTAVLKCQVPSYMSEFVLVTAWVQDTGMHLY 172
             :||       |: |..::...:.||.:|             .||         |.|:....|:.
  Fly    93 -VVG-------HLPRSELDDLDSNQVAEE-------------APS---------AIVRVRSSHII 127

  Fly   173 PNTDIGGKYTVLSNGELY--INNAGPNDAYKSYTCRTV------NRLTGEVQISTYPG----RII 225
            .:        |||....|  :...|....|.|    ||      :|||.|   .||||    |||
  Fly   128 DH--------VLSEARTYTCVGRTGSKTIYAS----TVVHPPRSSRLTPE---KTYPGAQKPRII 177

  Fly   226 VTEPKGMVQPRINVEKHSMRHVVLNGQT-TLPCIAQGHPVPTYRWFKEENEQLLPLQLSERITIV 289
            .||               ..|:.|.|.. .|||.....|.....|...||::::.   ..|..::
  Fly   178 YTE---------------KTHLDLMGSNIQLPCRVHARPRAEITWLNNENKEIVQ---GHRHRVL 224

  Fly   290 SAGLLKITKARLEDSGKYLCWVNNTAGEET 319
            :.|.|.|::.:.||.|.|.|...|..|::|
  Fly   225 ANGDLLISEIKWEDMGNYKCIARNVVGKDT 254

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Dscam4NP_001261571.1 Ig 31..124 CDD:416386 13/115 (11%)
Ig strand A 32..35 CDD:409353 0/24 (0%)
Ig strand A' 41..45 CDD:409353 0/3 (0%)
Ig strand B 48..57 CDD:409353 2/8 (25%)
Ig strand D 75..78 CDD:409353 0/2 (0%)
Ig strand E 83..88 CDD:409353 0/4 (0%)
Ig strand F 101..109 CDD:409353 0/7 (0%)
Ig strand G 112..124 CDD:409353 3/12 (25%)
Ig 235..326 CDD:416386 22/86 (26%)
Ig strand A 235..238 CDD:409353 0/2 (0%)
Ig strand A' 244..248 CDD:409353 1/3 (33%)
Ig strand B 251..258 CDD:409353 3/7 (43%)
Ig strand C 266..271 CDD:409353 1/4 (25%)
Ig strand C' 276..279 CDD:409353 0/2 (0%)
Ig strand D 285..289 CDD:409353 1/3 (33%)
Ig strand E 292..298 CDD:409353 3/5 (60%)
Ig strand F 305..313 CDD:409353 3/7 (43%)
Ig strand G 316..326 CDD:409353 2/4 (50%)
IgC2_3_Dscam 329..417 CDD:409549
Ig strand B 347..351 CDD:409549
Ig strand C 360..364 CDD:409549
Ig strand E 383..387 CDD:409549
Ig strand F 397..402 CDD:409549
Ig strand G 410..413 CDD:409549
IgI_4_Dscam 422..516 CDD:409548
Ig strand B 439..443 CDD:409548
Ig strand C 452..456 CDD:409548
Ig strand E 482..486 CDD:409548
Ig strand F 496..501 CDD:409548
Ig strand G 509..512 CDD:409548
IgI_5_Dscam 520..607 CDD:409550
Ig strand B 536..540 CDD:409550
Ig strand C 549..553 CDD:409550
Ig strand E 571..575 CDD:409550
Ig strand F 586..591 CDD:409550
Ig strand G 600..603 CDD:409550
Ig 610..703 CDD:416386
Ig strand A 611..613 CDD:409353
Ig strand A' 620..624 CDD:409353
Ig strand B 627..636 CDD:409353
Ig strand C 641..648 CDD:409353
Ig strand C' 650..652 CDD:409353
Ig strand D 659..664 CDD:409353
Ig strand E 668..675 CDD:409353
Ig strand F 682..690 CDD:409353
Ig strand G 693..702 CDD:409353
IgI_7_Dscam 706..801 CDD:409546
Ig strand B 724..728 CDD:409546
Ig strand C 737..741 CDD:409546
Ig strand E 766..770 CDD:409546
Ig strand F 780..785 CDD:409546
Ig strand G 794..797 CDD:409546
Ig 818..904 CDD:416386
putative Ig strand B 820..827 CDD:409353
putative Ig strand C 835..841 CDD:409353
putative Ig strand C' 853..856 CDD:409353
putative Ig strand D 862..866 CDD:409353
putative Ig strand E 868..874 CDD:409353
putative Ig strand F 881..889 CDD:409353
putative Ig strand G 892..902 CDD:409353
FN3 906..999 CDD:238020
FN3 1006..1110 CDD:238020
fn3 1117..1203 CDD:394996
FN3 1215..1307 CDD:238020
Ig <1334..1401 CDD:416386
Ig strand C 1345..1349 CDD:409353
Ig strand D 1363..1366 CDD:409353
Ig strand E 1367..1372 CDD:409353
Ig strand F 1380..1388 CDD:409353
Ig strand G 1394..1401 CDD:409353
FN3 1405..1494 CDD:238020
FN3 1499..1580 CDD:238020
ImpL2NP_728961.2 IGc2 187..251 CDD:197706 18/66 (27%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3510
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.810

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