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Protein Alignment Dscam4 and DIP-zeta

DIOPT Version :9

Sequence 1:	NP_001261571.1	Gene:	Dscam4 / 2769008	FlyBaseID:	FBgn0263219	Length:	1935	Species:	Drosophila melanogaster
Sequence 2:	NP_723441.2	Gene:	DIP-zeta / 34231	FlyBaseID:	FBgn0051708	Length:	532	Species:	Drosophila melanogaster

Alignment Length:	507	Identity:	120/507 - (23%)
Similarity:	183/507 - (36%)	Gaps:	124/507 - (24%)

- Green bases have known domain annotations that are detailed below.

  Fly   412 TAELQLGDASPELLYWFSEQTLQPGPTVSLKCVATGNPLPQFTWSLDGFPIPDSSRFLVGQYVTI 476
            |:.|.:....||...:....|:..|..|.|.|........:..|          ..|.....:|:
  Fly   103 TSNLNIVVEEPEFTEYIENVTVPAGRNVKLGCSVKNLGSYKVAW----------MHFEQSAILTV 157

  Fly   477 HDDVIS------------------HVNISNVKEEDGGEYTCTAQNAIGKVSHSAKVNIYGLPYIR 523
            |:.||:                  :::|:||.|||.|.|.|.. |.:...:....:|:...|.|.
  Fly   158 HNHVITRNPRISVTHDKHDRHRTWYLHINNVHEEDRGRYMCQI-NTVTAKTQFGYLNVVVPPNID 221

  Fly   524 EMPKITGISGSDLIV--------KCPVAGYPIDKIHWERDGQT-LPINRRQ--RAYNNGTLIIEQ 577
            :     .:|.||:||        :|..:|.|...|.|:||..: :.||:..  ..:...||.|.:
  Fly   222 D-----SLSSSDVIVREGANISLRCRASGSPRPIIKWKRDDNSRIAINKNHIVNEWEGDTLEITR 281

  Fly   578 LQRLEDAGTYTCMAQNKQKQTSRRNVEIQVLVPPKIM-PIQAMTNMLREGMRAAISCQILEGDLP 641
            :.|| |.|.|.|:|.|....|..:.:::.|..||.:: |.|.:.  ..||....|.| ..|.. |
  Fly   282 ISRL-DMGAYLCIASNGVPPTVSKRIKVSVDFPPMLLIPHQLVG--APEGFNVTIEC-FTEAH-P 341

  Fly   642 VSFR-WERNGKPLIGTGN----EVFRRLDEYSA--SLVIEHISSDHSGNYTCIASNVAGTERFTV 699
            .|.. |.|...|:|...:    |....|..|..  .|.|.::||...|.|.|:|.|..|.....:
  Fly   342 TSLNYWTRGEGPIIHDSHKYKVEATVGLPAYKTHMKLTIINVSSGDDGIYKCVAKNPRGETDGII 406

  Fly   700 PLTVNVPPKWILEPKDSSAQAGADVLLHCQSSGYPTPTITWKKAIGPTPGEYKDFLYEPTVQLFP 764
            .|.|:.||        ::|.:|.          |.|.|...:..|.      .::.|..     |
  Fly   407 RLYVSYPP--------TTASSGI----------YSTDTHWGENGIN------NNYAYGG-----P 442

  Fly   765 NGT--IFFKKISKESQGHFLCEAKNNIGSGVSKVIFLKVNVPAHFQTKTKQISVAKG--KQVHVQ 825
            :.|  |:.:..:...|.:.     |.||....|          .|..||:...:|.|  .:...:
  Fly   443 DSTRSIYAQDKNTRYQSNL-----NEIGLSEQK----------SFLDKTQNPLLANGNANEADAE 492

  Fly   826 CN-VQGDNP-IDFKWKIQATQQYLDESLDSRYTIRDQVLDDGMVSELGISHT 875
            .| .:|.|| :...|........|       .|||         |.:|.||:
  Fly   493 SNGARGHNPSMAIAWLFVVIATLL-------LTIR---------SAVGSSHS 528

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.