DRSC/TRiP Functional Genomics Resources

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Protein Alignment Dscam4 and boc

DIOPT Version :10

Sequence 1:NP_001261571.1 Gene:Dscam4 / 2769008 FlyBaseID:FBgn0263219 Length:1935 Species:Drosophila melanogaster
Sequence 2:NP_001005393.1 Gene:boc / 334628 ZFINID:ZDB-GENE-030131-6560 Length:1032 Species:Danio rerio


Alignment Length:1005 Identity:221/1005 - (21%)
Similarity:345/1005 - (34%) Gaps:241/1005 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   519 LPYIREMP-KITGISGSDLIVKCPVAGYPIDKIHWERDGQTLPINRRQR---AYNNGTLIIEQLQ 579
            :|...|.| .:....|..:.::|......:: |.|..:|:.||....:.   ....|:|.|..|.
Zfish    39 VPVFTEEPFSVVQKLGGSVTLRCSALPNHVN-ISWHLNGRELPAGGDEELGVLVRPGSLYIPSLT 102

  Fly   580 RLEDAGTYTCMAQNKQKQTSRRNVEIQVLVPPKIMPIQAMTNMLREGMRAAISCQILEGDLPVSF 644
            .| ..|.|.|:|.......:.....:.........|.......:.||..|.|.|.:.|.......
Zfish   103 NL-TVGRYQCVATTSVGSCASVPANVTAAKLRDFEPDDQQEIEVDEGNTAVIECHLPESQPKAQV 166

  Fly   645 R------WERNGKPLIGTGNEVFRRLDEYSASLVIEHISSDHSGNYTCIASN--------VAGTE 695
            |      |....|     ||.:...    |.:|.|.:.:.|..|.|.|.|.|        ...|:
Zfish   167 RYSVKQEWLETSK-----GNYLIMP----SGNLQIANATRDDEGPYICAAYNPVTQEIKTSTSTD 222

  Fly   696 RFTVPLTVNVPPKWILEPKDSS--AQAGADVLLHCQSSGYPTPTITWKKAIGPTPGEYKDFL--- 755
            |..:..:.:...:.|..|...|  ...|..::|.|.:||.|||.:||.          ||.|   
Zfish   223 RLRIRRSTSEAARIIYPPASRSIMVNKGQRLVLECVASGIPTPQVTWA----------KDGLDLR 277

  Fly   756 -YEPTVQLFPNGTIFFKKISKESQGHFLCEAKNNIGSGVSKVIFLKVNV--PAHFQTKTKQISVA 817
             :..|..|..|  :.....|:...|.::|.|.|.|||..|..:...|.|  |...:.:.:|..||
Zfish   278 NHNNTRFLLSN--LLIDAASESDSGTYVCLADNGIGSTSSAQVLYDVQVFEPPQVRVELQQQDVA 340

  Fly   818 KGKQVHVQCNVQGDNPIDFKWKIQATQQYLDESLDSRYTIRDQVLDDGMVSELGISHTYRQDTGI 882
            .|..|...|.|:|.......|...|  |.|..|  .|:.:..|||   .|..:|     .||.|:
Zfish   341 WGDTVRFSCQVRGKPAPTVVWLHNA--QPLSPS--PRHRVSAQVL---RVLNVG-----PQDDGM 393

  Fly   883 YICQASNAFGQDEMSIQLIV------QEVP------------EQP----------------KNLR 913
            |.|.|.|..|..:.:.:|:.      :::|            |||                ..:|
Zfish   394 YQCMAENGVGSSQAATRLLTLPTVPSRKMPMIRPLSPDKVLREQPPLKPPVSTSAVLPFDCSEVR 458

  Fly   914 INSQQSRSL------------QLTWSQPFAGNSPIEEYHIYYKQISDI---WQNAEHLTIAGAQT 963
            ::..::..:            :|||.....|.:|:.||.|.|::..:.   |...   ||:|:|.
Zfish   459 VSPAEAPVILSQPRTGKADYYELTWKPRHDGGAPVLEYIIKYRKAGESPGEWTTN---TISGSQH 520

  Fly   964 VINIQQLRPAKAYHIRMSAENKLGASEFSEVVQVT--TLEEVPSGPPLAVRAEPKSS-------- 1018
            .:.:.:|:||..|.:.|:|.|..|..:.:.:...|  .....|.|||.....:|:.|        
Zfish   521 KLILTKLQPASLYEVEMAARNCAGLGQPAMMTFRTGKWRRGGPIGPPKTPVVQPRLSPPEAPDRP 585

  Fly  1019 -------TEIFVTWDAPERDHWNGILLGYYVGYQMSLTPEDKEVNPTQGFSFKTVEVRSHFGGET 1076
                   |..:|||                       .|......|.|.|..:..::|...|...
Zfish   586 TVSMATETSAYVTW-----------------------IPRGNRGFPIQSFRVEHKKLRKGSGDWE 627

  Fly  1077 VLAN-------------LNKFTQYHVIVQAYTSQGSGPPSKEIAVQTMEDVPSSPPESPQCD--- 1125
            |..|             |.|.|.|...|.|....|:.|||......|:  |.|.||.....|   
Zfish   628 VAVNNIPPSRLSVEVTGLEKGTSYKFRVLAVNVLGASPPSAPSKAYTV--VGSGPPNRRPIDGPY 690

  Fly  1126 -----VLGSTSIYITWSPPDIDGQNGKIKGYKVFYISVDELYETD--PEVVKSTNQYVTIENLRK 1183
                 .:..|:|.:.|:...::  |..|.|:.:||...|...::|  .:||:....:.:|.:|:.
Zfish   691 ITYNEAINETTIILKWTYTPLN--NTPIYGFYIFYRPTDSDNDSDYKKDVVEGDRYWHSITDLQP 753

  Fly  1184 YTNYTVWVLAYTKVGDG-------MKTKPFYCRTHEDVPSAPQAIKAIPASSSKIIISWLPPDLP 1241
            .|.|.:.:..:.:.|:.       ::||   .|.|:.. :.|:...:.|......:..  |.|||
Zfish   754 ETAYDIKMQCFNEGGESEFGNVVILETK---ARPHQRT-TPPETASSRPEHPGNPVPR--PGDLP 812

  Fly  1242 NGDITGYTFYMSMLEGGREEGTHKRLLGPFVEMHETVRTQESATYQFWLTASTKMGEGEKTQVVT 1306
                     |:.:       |.   :||.||.:  .|.......::.|......:.....|...|
Zfish   813 ---------YLIV-------GV---VLGAFVFI--IVAFIPICLWRVWAKQKQTLDMRFPTLAAT 856

  Fly  1307 VPP--NNKVPARIVSFSQRIVTPWKEHLELPCRKVGAPAPVTIWR--------QDGHNMETSARK 1361
            |.|  ...||.:.::..:  ..|...||. |...|.||....|..        ..||..:.:   
Zfish   857 VSPCQYTMVPLQGLALGR--ACPVDPHLS-PSHTVYAPKAEYIPNGKHAAQRLPPGHQEDPN--- 915

  Fly  1362 TIAKNGTLYMKECQA---SDAGNYTCSVEN 1388
                    |..||.|   .|..|...::.|
Zfish   916 --------YELECDALLPQDLPNQQQNIHN 937

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Dscam4NP_001261571.1 Ig 31..124 CDD:472250
Ig strand B 50..54 CDD:409353
Ig strand C 63..66 CDD:409353
Ig strand E 82..86 CDD:409353
Ig strand F 102..107 CDD:409353
Ig strand G 115..119 CDD:409353
Ig 235..326 CDD:472250
Ig strand B 253..257 CDD:409353
Ig strand C 266..270 CDD:409353
Ig strand E 292..296 CDD:409353
Ig strand F 306..311 CDD:409353
Ig strand G 319..322 CDD:409353
IgC2_3_Dscam 329..417 CDD:409549
Ig strand A 330..335 CDD:409549
Ig strand A' 338..342 CDD:409549
Ig strand B 345..355 CDD:409549
Ig strand C 360..366 CDD:409549
Ig strand C' 367..370 CDD:409549
Ig strand E 383..389 CDD:409549
Ig strand F 396..404 CDD:409549
Ig strand G 407..417 CDD:409549
IgI_4_Dscam 422..516 CDD:409548
Ig strand A' 430..434 CDD:409548
Ig strand B 437..446 CDD:409548
Ig strand C 451..457 CDD:409548
Ig strand C' 459..462 CDD:409548
Ig strand D 467..475 CDD:409548
Ig strand E 479..488 CDD:409548
Ig strand F 495..503 CDD:409548
Ig strand G 506..516 CDD:409548
IgI_5_Dscam 520..607 CDD:409550 19/90 (21%)
Ig strand A 520..522 CDD:409550 1/1 (100%)
Ig strand A' 527..531 CDD:409550 0/3 (0%)
Ig strand B 534..541 CDD:409550 0/6 (0%)
Ig strand C 548..554 CDD:409550 2/5 (40%)
Ig strand C' 555..557 CDD:409550 0/1 (0%)
Ig strand D 564..568 CDD:409550 0/6 (0%)
Ig strand E 571..577 CDD:409550 3/5 (60%)
Ig strand F 585..593 CDD:409550 4/7 (57%)
Ig strand G 597..607 CDD:409550 0/9 (0%)
Ig 610..703 CDD:472250 23/106 (22%)
Ig strand B 629..633 CDD:409353 2/3 (67%)
Ig strand C 643..647 CDD:409353 1/9 (11%)
Ig strand E 669..673 CDD:409353 1/3 (33%)
Ig strand F 683..688 CDD:409353 2/4 (50%)
Ig strand G 696..699 CDD:409353 1/2 (50%)
IgI_7_Dscam 706..801 CDD:409546 28/100 (28%)
Ig strand A 706..710 CDD:409546 0/3 (0%)
Ig strand A' 715..719 CDD:409546 1/5 (20%)
Ig strand B 722..731 CDD:409546 2/8 (25%)
Ig strand C 737..743 CDD:409546 2/5 (40%)
Ig strand C' 749..752 CDD:409546 0/2 (0%)
Ig strand D 760..763 CDD:409546 0/2 (0%)
Ig strand E 766..772 CDD:409546 0/5 (0%)
Ig strand F 779..787 CDD:409546 3/7 (43%)
Ig strand G 792..801 CDD:409546 1/8 (13%)
Ig 804..889 CDD:472250 26/84 (31%)
Ig strand B 822..826 CDD:409353 1/3 (33%)
Ig strand C 835..839 CDD:409353 0/3 (0%)
FN3 <850..1254 CDD:442628 106/499 (21%)
Ig strand F 882..887 CDD:409353 2/4 (50%)
FN3 906..999 CDD:238020 28/137 (20%)
fn3 1117..1203 CDD:394996 20/102 (20%)
FN3 1185..>1580 CDD:442628 44/224 (20%)
FN3 1405..1494 CDD:238020
bocNP_001005393.1 Ig_3 40..114 CDD:464046 18/75 (24%)
Ig 143..209 CDD:472250 19/74 (26%)
Ig strand B 151..155 CDD:409358 2/3 (67%)
Ig strand C 165..169 CDD:409358 1/3 (33%)
Ig strand E 188..192 CDD:409358 1/3 (33%)
Ig strand F 202..207 CDD:409358 2/4 (50%)
Ig 242..314 CDD:472250 25/83 (30%)
Ig strand B 253..257 CDD:409394 1/3 (33%)
Ig strand C 266..270 CDD:409394 1/3 (33%)
Ig strand F 301..306 CDD:409394 1/4 (25%)
I-set 328..411 CDD:400151 27/94 (29%)
Ig strand B 345..349 CDD:409549 1/3 (33%)
Ig strand C 358..362 CDD:409549 0/3 (0%)
Ig strand E 379..383 CDD:409549 3/6 (50%)
Ig strand F 393..398 CDD:409549 2/4 (50%)
Ig strand G 406..409 CDD:409549 0/2 (0%)
fn3 481..548 CDD:394996 22/69 (32%)
FN3 <561..>794 CDD:442628 56/263 (21%)
FN3 579..674 CDD:238020 22/117 (19%)
Blue background indicates that the domain is not in the aligned region.

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