DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Dscam4 and Nrcam

DIOPT Version :10

Sequence 1:NP_001261571.1 Gene:Dscam4 / 2769008 FlyBaseID:FBgn0263219 Length:1935 Species:Drosophila melanogaster
Sequence 2:XP_006516011.1 Gene:Nrcam / 319504 MGIID:104750 Length:1308 Species:Mus musculus


Alignment Length:1850 Identity:364/1850 - (19%)
Similarity:585/1850 - (31%) Gaps:643/1850 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 LILYVIRAETSQFVNGLD-----------LQGPIFLHEPPHRVEFSNNSGGLIECSGHGSPPPEV 64
            |||::     .|.::.||           :|.|....:.|...........:|:|...|.|||..
Mouse    19 LILFL-----CQMISALDVPLDPKLLHDLVQPPTITQQSPKDYIIDPRENIVIQCEAKGKPPPSF 78

  Fly    65 EW----TPIPPQQDMVFQLSNGSMMFYPFTAEKYRHEVHATVYRCKLRNLVGTVLSREVHVRGVV 125
            .|    |.....:|.:..:..||.........:.:.|.:..||:|..||..|..:|..:.||...
Mouse    79 SWTRNGTHFDIDKDPLVTMKPGSGTLVINIMSEGKAETYEGVYQCTARNERGAAVSNNIVVRPSR 143

  Fly   126 NQKYAVQVHDEYVM-TGNTAVLKCQVPSYMSEFVLVTAWVQDTGMHLYPNTDIGGKYTVLSNGEL 189
            :..:..:..:..|: .|.:.||.|:.|..:...::.  |: |......|.::   :.:...||:|
Mouse   144 SPLWTKERLEPIVLQNGQSLVLPCRPPIGLPPAIIF--WM-DNSFQRLPQSE---RVSQGLNGDL 202

  Fly   190 YINNAGPNDAYKSYTCRTVNRLTGEVQISTYPGRIIVTEPKGMVQPRINVEKHSMRHVVLNGQTT 254
            |.:|..|.|..:.|.|                            ..|.|   |:        || 
Mouse   203 YFSNVLPEDTREDYIC----------------------------YARFN---HT--------QT- 227

  Fly   255 LPCIAQGHPVPTYRWFKEENEQLLPLQLSERITIVSAGLLKITKARLEDSGKYLCWVNNTAGEET 319
               |.|..|:                           .|..|:...|.|                
Mouse   228 ---IQQKQPI---------------------------SLKVISVDELND---------------- 246

  Fly   320 IQVSLTVTAPLTAHLQPQVQTVDVDKDAQFQCIVSGHPVHDVNWLHDGKPILRDNRVEILTDPPR 384
                 |:.|.|:              |.:|..                                 
Mouse   247 -----TIAANLS--------------DTEFYG--------------------------------- 259

  Fly   385 LIIKKVQKEDPGMYQCFVSNEWEQIQSTAELQLGDASPELLYWFSEQTLQPGPTVSLKCVATGNP 449
               .|..||.|..:.....||    ....||:                   |..:||:|:|.|.|
Mouse   260 ---AKSSKERPPTFLTPEGNE----SHKEELR-------------------GNVLSLECIAEGLP 298

  Fly   450 LPQFTWSLDGFPIPDSSRFLVGQYVTIHDDVISHVNISNVKEEDGGEYTCTAQNAIGKVSHSAKV 514
            .|...|..:...:|.:.        |.:.:....:.|::|.|.|.|.|.|.|:||:|.|.|:..|
Mouse   299 TPIIYWIKEDGMLPANR--------TFYRNFKKTLQITHVSEADSGNYQCIAKNALGAVHHTISV 355

  Fly   515 NIYGLPYIREMPKITGISGSDLIVKCPVAGYPIDKIHWERDGQTLPINRRQRAYNNGTLIIEQLQ 579
            .:...||                              |....|.|.::..:    |||||     
Mouse   356 TVKAAPY------------------------------WIVAPQNLVLSPGE----NGTLI----- 381

  Fly   580 RLEDAGTYTCMAQNKQKQTSRRNVEIQVLVPPKIMPIQAMTNMLREGMRAAISCQILEGDLPVSF 644
                     |.|....|              |:|                               
Mouse   382 ---------CRANGNPK--------------PRI------------------------------- 392

  Fly   645 RWERNGKPLIGTGNEVFRRLDEYSASLVIEHISSDHSGNYTCIASNVAGTERFTVPLTVNVPPKW 709
            .|..||.|:....::..|::|  ..:::..::....|..|.|.|||..|.......:.|...|..
Mouse   393 SWLTNGVPIEIALDDPSRKID--GDTIIFSNVQESSSAVYQCNASNKYGYLLANAFVNVLAEPPR 455

  Fly   710 ILEPKDSSAQ--AGADVLLHCQSSGYPTPTITWKKAIGPTPGEYKDFLYEPTVQLFPNGTIFFKK 772
            ||...::..|  |....||.|...|.|.|||.|.|      |.....|:|....|..|||:....
Mouse   456 ILTSANTLYQVIANRPALLDCAFFGSPMPTIEWFK------GTKGSALHEDIYVLHDNGTLEIPV 514

  Fly   773 ISKESQGHFLCEAKNNIGSGVSKVIFLKVNVPAHFQTKTKQISVAKGKQVHVQCNVQGDNPI--D 835
            ..|:|.|.:.|.|:|.:|...::| .|::..|.....:.:...|.:|.:|..:|.|:.|:.:  .
Mouse   515 AQKDSTGTYTCVARNKLGMAKNEV-HLEIKDPTRIIKQPEYAVVQRGSKVSFECRVKHDHTLIPT 578

  Fly   836 FKWKIQATQQYLDE--SLDSRYTIRDQVLDDGMVSELGISHTYRQDTGIYICQASNAFGQDEMSI 898
            ..|.....:...||  |.|..:.:...|.||              |.|.|.|.|:........|.
Mouse   579 IMWLKDNGELPNDERFSTDKDHLVVSDVKDD--------------DGGTYTCTANTTLDSASASA 629

  Fly   899 QLIV----------QEVPEQPKNLRINSQQSRSLQLTWSQPFAGNSPIEEYHIYYKQI---SDIW 950
            .|.|          .:||..|.:|.:.:|..:|:||||:.....||||.::.|.|:..   :.:|
Mouse   630 VLRVVAPTPTPAPIYDVPNPPFDLELTNQLDKSVQLTWTPGDDNNSPITKFIIEYEDAMHDAGLW 694

  Fly   951 QN-AEHLTIAGAQTVINIQQLRPAKAYHIRMSAENKLGASEFSEV-VQVTTLEEVPSGPPLAVRA 1013
            :: ||   ::|.||...: :|.|...|..|:.|||.:|.|..||. .|..|....|...|:||..
Mouse   695 RHQAE---VSGTQTTAQL-KLSPYVNYSFRVMAENSIGRSMPSEASEQYLTKAAEPDQNPMAVEG 755

  Fly  1014 EPKSSTEIFVTWDAPERDHWNGILLGYYVGYQMSLTPEDKEVNPTQGFSFKTVEVRSHFGGETVL 1078
            .......:.:||........||..|.|.|.::.    :|.:...|                ..|:
Mouse   756 LGTEPDNLVITWKPLNGFQSNGPGLQYKVSWRQ----KDGDDEWT----------------SVVV 800

  Fly  1079 ANLNK--------FTQYHVIVQAYTSQGSGPPSKEIAVQTMEDVPSSPPESPQCDVLGSTSIYIT 1135
            ||::|        |..|.:.|||....|..|....:...:.||:|...|.:.:..|:.||...:.
Mouse   801 ANVSKYIVSGTPTFVPYLIKVQALNDVGFAPEPAAVMGHSGEDLPMVAPGNVRVSVVNSTLAEVH 865

  Fly  1136 WSPPDIDGQNGKIKGYKVFYISVDELYETDPEVV-------KSTNQYVTIENLRKYTNYTVWVLA 1193
            |.|.......|.::||:::|.......:.:...:       :.|..:..:..|:.|::|.:.|..
Mouse   866 WDPVPPKSVRGHLQGYRIYYWKTQSSSKRNRRHIEKKILTFQGTKTHGMLPGLQPYSHYALNVRV 930

  Fly  1194 YTKVGDGMKTKPFYCRTHEDVPSAPQAIKAIPASSSKIIISWLPPDLPNGDITGYTFYMSMLEGG 1258
            ....|:|..:......|.|.|||||.::|.:..:...:.:.|.||..|||.:|.|     :|:..
Mouse   931 VNGKGEGPASTDRGFHTPEGVPSAPSSLKIVNPTLDSLTLEWDPPSHPNGILTEY-----ILQYQ 990

  Fly  1259 REEGTHKRLLGPFVEM----HETVRTQE----SATYQFWLTASTKMGEGEKTQVVTVPPNNKVPA 1315
            ....||:  |||.|::    ::|..|.:    |..|:|:..|.|.:|.|.:              
Mouse   991 PINSTHE--LGPLVDLKIPANKTRWTLKNLNFSTRYKFYFYAQTSVGPGSQ-------------- 1039

  Fly  1316 RIVSFSQRIVTPWKEHLELPCRKVGAPAPVTIWRQDGHNMETSARKTIAKNGTLYMKECQASDAG 1380
                .::..:|...|        .|.|.|           :..|.|..|.|              
Mouse  1040 ----ITEEAITTVDE--------AGIPPP-----------DVGAGKVRAVN-------------- 1067

  Fly  1381 NYTCSVENTWGKDEIVYNIVVKVPPEAPNLTVINAYTDSLLLEWMDNSHGGSPILGYVINYKRDN 1445
                                    |...|||...|.|.:                         |
Mouse  1068 ------------------------PRISNLTATAAETYA-------------------------N 1083

  Fly  1446 GDWEELQVDSKTTSHLLTNLWCGTRYQLYITAYNKIGTGLPCDIVNSYTKGNPPVQPKHSQMITN 1510
            ..||                     |:                                      
Mouse  1084 ITWE---------------------YE-------------------------------------- 1089

  Fly  1511 NSTSVTCWLDSWGDGGCGILYFMIESRVYG-RSSW--AVVSNHIPPTERIYTVSDLVPGTKYQLK 1572
                           |.|.:.|.:|..|.| :..|  .:|:.    :...:.:..|:|||.|:::
Mouse  1090 ---------------GPGHVTFYVEYGVAGSKEEWRKEIVNG----SRSFFGLKGLMPGTAYKVR 1135

  Fly  1573 VTAHNNAGSTTAIYNFTT----------LSTQGVIYNNDHSTPVSHLSDLPFYANFKLLLPICFS 1627
            |.|..::|..::...|.|          ::|||                      :.:.|....:
Mouse  1136 VGAEGDSGFVSSEDVFETGPAMASRQVDIATQG----------------------WFIGLMCAVA 1178

  Fly  1628 LLMLLALIGAALFLRKRKLASQARLASSSMSESPSLANLQNKQNRDQQYLAVRCNPGTSAP--RG 1690
            ||:|:.||  ..|:|:.|...............|.:..::.......:|.:...:.....|  :|
Mouse  1179 LLILILLI--VCFIRRNKGGKYPVKEKEDAHADPEIQPMKEDDGTFGEYRSFESDAEDHKPLKKG 1241

  Fly  1691 SNSNDSGSFGKAEGNEYIEDICPYATFQLNKQTYSESSYSGNVYSGPYHSVRGSFVYHDVKPESY 1755
            |.:....:..|.:.::.:.|.......|.|:    :.|:.|. |||              |.|  
Mouse  1242 SRTPSDRTVKKEDSDDSLVDYGEGVNGQFNE----DGSFIGQ-YSG--------------KKE-- 1285

  Fly  1756 HSKEPEYTKVRRKVGRLRDPHSESQESDNP 1785
              |||.             ..:||.|:.:|
Mouse  1286 --KEPA-------------EGNESSEAPSP 1300

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Dscam4NP_001261571.1 Ig 31..124 CDD:472250 23/96 (24%)
Ig strand B 50..54 CDD:409353 1/3 (33%)
Ig strand C 63..66 CDD:409353 0/2 (0%)
Ig strand E 82..86 CDD:409353 2/3 (67%)
Ig strand F 102..107 CDD:409353 3/4 (75%)
Ig strand G 115..119 CDD:409353 1/3 (33%)
Ig 235..326 CDD:472250 12/90 (13%)
Ig strand B 253..257 CDD:409353 1/3 (33%)
Ig strand C 266..270 CDD:409353 0/3 (0%)
Ig strand E 292..296 CDD:409353 1/3 (33%)
Ig strand F 306..311 CDD:409353 0/4 (0%)
Ig strand G 319..322 CDD:409353 0/2 (0%)
IgC2_3_Dscam 329..417 CDD:409549 11/87 (13%)
Ig strand A 330..335 CDD:409549 1/4 (25%)
Ig strand A' 338..342 CDD:409549 0/3 (0%)
Ig strand B 345..355 CDD:409549 2/9 (22%)
Ig strand C 360..366 CDD:409549 0/5 (0%)
Ig strand C' 367..370 CDD:409549 0/2 (0%)
Ig strand E 383..389 CDD:409549 0/5 (0%)
Ig strand F 396..404 CDD:409549 0/7 (0%)
Ig strand G 407..417 CDD:409549 2/9 (22%)
IgI_4_Dscam 422..516 CDD:409548 25/93 (27%)
Ig strand A' 430..434 CDD:409548 0/3 (0%)
Ig strand B 437..446 CDD:409548 3/8 (38%)
Ig strand C 451..457 CDD:409548 2/5 (40%)
Ig strand C' 459..462 CDD:409548 0/2 (0%)
Ig strand D 467..475 CDD:409548 0/7 (0%)
Ig strand E 479..488 CDD:409548 1/8 (13%)
Ig strand F 495..503 CDD:409548 4/7 (57%)
Ig strand G 506..516 CDD:409548 4/9 (44%)
IgI_5_Dscam 520..607 CDD:409550 13/86 (15%)
Ig strand A 520..522 CDD:409550 1/1 (100%)
Ig strand A' 527..531 CDD:409550 0/3 (0%)
Ig strand B 534..541 CDD:409550 0/6 (0%)
Ig strand C 548..554 CDD:409550 1/5 (20%)
Ig strand C' 555..557 CDD:409550 0/1 (0%)
Ig strand D 564..568 CDD:409550 0/3 (0%)
Ig strand E 571..577 CDD:409550 4/5 (80%)
Ig strand F 585..593 CDD:409550 2/7 (29%)
Ig strand G 597..607 CDD:409550 0/9 (0%)
Ig 610..703 CDD:472250 15/92 (16%)
Ig strand B 629..633 CDD:409353 0/3 (0%)
Ig strand C 643..647 CDD:409353 0/3 (0%)
Ig strand E 669..673 CDD:409353 0/3 (0%)
Ig strand F 683..688 CDD:409353 2/4 (50%)
Ig strand G 696..699 CDD:409353 0/2 (0%)
IgI_7_Dscam 706..801 CDD:409546 31/96 (32%)
Ig strand A 706..710 CDD:409546 1/3 (33%)
Ig strand A' 715..719 CDD:409546 0/3 (0%)
Ig strand B 722..731 CDD:409546 3/8 (38%)
Ig strand C 737..743 CDD:409546 3/5 (60%)
Ig strand C' 749..752 CDD:409546 1/2 (50%)
Ig strand D 760..763 CDD:409546 0/2 (0%)
Ig strand E 766..772 CDD:409546 2/5 (40%)
Ig strand F 779..787 CDD:409546 3/7 (43%)
Ig strand G 792..801 CDD:409546 2/8 (25%)
Ig 804..889 CDD:472250 20/88 (23%)
Ig strand B 822..826 CDD:409353 1/3 (33%)
Ig strand C 835..839 CDD:409353 0/3 (0%)
FN3 <850..1254 CDD:442628 108/433 (25%)
Ig strand F 882..887 CDD:409353 2/4 (50%)
FN3 906..999 CDD:238020 33/97 (34%)
fn3 1117..1203 CDD:394996 17/92 (18%)
FN3 1185..>1580 CDD:442628 70/405 (17%)
FN3 1405..1494 CDD:238020 10/88 (11%)
NrcamXP_006516011.1 IgI_NrCAM 46..140 CDD:409458 21/93 (23%)
Ig strand A 46..50 CDD:409458 1/3 (33%)
Ig strand A' 55..59 CDD:409458 0/3 (0%)
Ig strand B 64..71 CDD:409458 2/6 (33%)
Ig strand C 77..82 CDD:409458 1/4 (25%)
Ig strand C' 85..87 CDD:409458 1/1 (100%)
Ig strand D 94..97 CDD:409458 0/2 (0%)
Ig strand E 102..106 CDD:409458 0/3 (0%)
Ig strand F 119..127 CDD:409458 3/7 (43%)
Ig strand G 130..140 CDD:409458 2/9 (22%)
Ig 149..238 CDD:472250 27/164 (16%)
Ig strand B 163..167 CDD:409353 2/3 (67%)
Ig strand C 177..181 CDD:409353 0/5 (0%)
Ig strand E 200..204 CDD:409353 2/3 (67%)
Ig strand F 215..220 CDD:409353 2/32 (6%)
Ig strand G 231..234 CDD:409353 0/2 (0%)
Ig 277..358 CDD:472250 28/111 (25%)
Ig strand B 288..292 CDD:409353 2/3 (67%)
Ig strand C 301..305 CDD:409353 0/3 (0%)
Ig strand E 323..327 CDD:409353 0/3 (0%)
Ig strand F 337..342 CDD:409353 2/4 (50%)
Ig strand G 350..353 CDD:409353 1/2 (50%)
Ig 362..450 CDD:472250 27/182 (15%)
Ig strand B 378..382 CDD:409353 4/17 (24%)
Ig strand C 391..395 CDD:409353 1/34 (3%)
Ig strand E 415..419 CDD:409353 0/3 (0%)
Ig strand F 429..434 CDD:409353 2/4 (50%)
Ig strand G 442..445 CDD:409353 0/2 (0%)
Ig 456..542 CDD:472250 30/92 (33%)
Ig strand B 472..476 CDD:409353 2/3 (67%)
Ig strand C 485..489 CDD:409353 2/3 (67%)
Ig strand E 508..512 CDD:409353 2/3 (67%)
Ig strand F 522..527 CDD:409353 1/4 (25%)
Ig strand G 535..538 CDD:409353 0/2 (0%)
Ig 547..633 CDD:472250 21/99 (21%)
Ig strand B 563..567 CDD:409353 1/3 (33%)
Ig strand C 578..582 CDD:409353 0/3 (0%)
Ig strand E 600..603 CDD:409353 0/2 (0%)
Ig strand F 613..618 CDD:409353 2/4 (50%)
Ig strand G 626..629 CDD:409353 0/2 (0%)
FN3 647..737 CDD:238020 32/93 (34%)
fn3 750..832 CDD:394996 22/101 (22%)
fn3 848..940 CDD:394996 17/91 (19%)
FN3 <916..>1147 CDD:442628 73/415 (18%)
fn3 953..1037 CDD:394996 27/90 (30%)
Bravo_FIGEY 1191..1284 CDD:464016 16/111 (14%)

Return to query results.
Submit another query.