| Sequence 1: | NP_001261571.1 | Gene: | Dscam4 / 2769008 | FlyBaseID: | FBgn0263219 | Length: | 1935 | Species: | Drosophila melanogaster |
|---|---|---|---|---|---|---|---|---|---|
| Sequence 2: | XP_063121496.1 | Gene: | Robo3 / 315564 | RGDID: | 1311018 | Length: | 1413 | Species: | Rattus norvegicus |
| Alignment Length: | 1607 | Identity: | 336/1607 - (20%) |
|---|---|---|---|
| Similarity: | 531/1607 - (33%) | Gaps: | 514/1607 - (31%) |
- Green bases have known domain annotations that are detailed below.
|
Fly 419 DASPELLYWFSEQTLQPGPTVSLKCVATGNPLPQFTWSLDGFPI------PDSSRFLVGQYVTIH 477
Fly 478 DDVISHVNISNVKEEDGGEYTCTAQNAIG-KVSHSAKVNIYGL-PYIREMP-KITGISGSDLIVK 539
Fly 540 C-PVAGYPIDKIHWERDGQTLPINRRQRAYNNGTLIIEQLQRLEDAGTYTCMAQNKQKQTSRRNV 603
Fly 604 EIQVLVPPKIM--PI------QAMTNMLREGMRAAISCQILEGDLPVSFRWERNGKPLIGTGNEV 660
Fly 661 FRRLDEYSASLVIEHISSDHSGNYTCIASNVAGTERFTVPLTVNVPPKWILEPKDSSAQAGADVL 725
Fly 726 LHCQSSGYPTPTITWKKAIGPTPGEYKDFLYEPTVQLFPNGTIFFKKISKESQ-----------G 779
Fly 780 HFLCEAKNNIGSGVSKVIFLKVN-------VPAHFQTKTKQISVAKGKQVHVQCNVQGDNPIDFK 837
Fly 838 WKIQATQQYLDESLDSRYTIRDQVLDDGMVSELGISHTYRQDTGIYICQASNAFGQDEMSIQLIV 902
Fly 903 QE--------------VPEQPKNLRINSQQSRSLQLTWS--------------QPF---AGNSPI 936
Fly 937 EEYHIYYKQISDIWQNAEHLTIAGAQTVINIQQLRPAKAYHIRMSAENKLGASEFSEVVQVTTLE 1001
Fly 1002 EVPSGPPLAVRAEPKSSTEIFVTWDAPERDHWNG--------------ILLGYYVGYQMSLTPED 1052
Fly 1053 KEVNP---TQGF------------SFKTVEVRSHFGGETVLANLNKFTQYHVIVQAYTSQGSGPP 1102
Fly 1103 SKEIAVQTMEDVPSSPPESPQCDVLG--STSIYITWSPPDIDGQNGKIKGYKVFYISVDELYETD 1165
Fly 1166 PEVVKSTNQYVTIENLRKYTNYTVWVLAYTKVGDGMKTKPFYCRTHEDVPSAPQAIKAIPASSSK 1230
Fly 1231 IIISWLPPDLPNGDITGYTFYMSMLEGGRE--EGTHKR---------------------LLGPFV 1272
Fly 1273 EMHETVRTQE-----SATYQFWLTASTKMGEGEKTQVVTVPPNNKVPARIVSFSQRIVTPW-KEH 1331
Fly 1332 LELPCRKVGAPAPVTIWRQDGHNMETSARKTIAKNGTLYMKECQASDAGNYTCSVENTWGKDEIV 1396
Fly 1397 YNIV------------VKVPPEAPNLTVINAYTDSLLLEWMDNSHGGSPILGYVINYKRDNGDWE 1449
Fly 1450 ELQVDSKTTSHLLTNLWC-------GTRYQLYITAYNKIGTGLPCDIVN-SYTKGNPPVQPKHSQ 1506
Fly 1507 MITNNSTSVTC----------------W----------LDSWGDGGCGILYFMIE----SRVYGR 1541
Fly 1542 SSWAVVSNH-----IPPTE--RIYTVSDLVP-GTKYQLKV------------------------- 1573
Fly 1574 -------TAHNNAGSTTAIYNFTT-----------LSTQGVIYNNDHS---------TPVSHLSD 1611
Fly 1612 LPFYANFKLLLPICFSLLMLLALIGAALFLRKRKLASQARLASSSMSESPSLANLQNKQNRDQQY 1676
Fly 1677 LAVRCNPGTSAPRGSNSNDSGSFGKAEGNEYIEDICPYA--TFQLNKQTYSESSYSGNVYSGPYH 1739
Fly 1740 SVRGSFVYHDVKPESYHSKEPEYTKVRRKVGRLRDPHSESQESDNPG 1786 |
| Gene | Sequence | Domain | Region | External ID | Identity |
|---|---|---|---|---|---|
| Dscam4 | NP_001261571.1 | Ig | 31..124 | CDD:472250 | |
| Ig strand B | 50..54 | CDD:409353 | |||
| Ig strand C | 63..66 | CDD:409353 | |||
| Ig strand E | 82..86 | CDD:409353 | |||
| Ig strand F | 102..107 | CDD:409353 | |||
| Ig strand G | 115..119 | CDD:409353 | |||
| Ig | 235..326 | CDD:472250 | |||
| Ig strand B | 253..257 | CDD:409353 | |||
| Ig strand C | 266..270 | CDD:409353 | |||
| Ig strand E | 292..296 | CDD:409353 | |||
| Ig strand F | 306..311 | CDD:409353 | |||
| Ig strand G | 319..322 | CDD:409353 | |||
| IgC2_3_Dscam | 329..417 | CDD:409549 | |||
| Ig strand A | 330..335 | CDD:409549 | |||
| Ig strand A' | 338..342 | CDD:409549 | |||
| Ig strand B | 345..355 | CDD:409549 | |||
| Ig strand C | 360..366 | CDD:409549 | |||
| Ig strand C' | 367..370 | CDD:409549 | |||
| Ig strand E | 383..389 | CDD:409549 | |||
| Ig strand F | 396..404 | CDD:409549 | |||
| Ig strand G | 407..417 | CDD:409549 | |||
| IgI_4_Dscam | 422..516 | CDD:409548 | 25/100 (25%) | ||
| Ig strand A' | 430..434 | CDD:409548 | 0/3 (0%) | ||
| Ig strand B | 437..446 | CDD:409548 | 2/8 (25%) | ||
| Ig strand C | 451..457 | CDD:409548 | 2/5 (40%) | ||
| Ig strand C' | 459..462 | CDD:409548 | 1/2 (50%) | ||
| Ig strand D | 467..475 | CDD:409548 | 2/7 (29%) | ||
| Ig strand E | 479..488 | CDD:409548 | 1/8 (13%) | ||
| Ig strand F | 495..503 | CDD:409548 | 5/7 (71%) | ||
| Ig strand G | 506..516 | CDD:409548 | 3/10 (30%) | ||
| IgI_5_Dscam | 520..607 | CDD:409550 | 19/88 (22%) | ||
| Ig strand A | 520..522 | CDD:409550 | 0/1 (0%) | ||
| Ig strand A' | 527..531 | CDD:409550 | 0/3 (0%) | ||
| Ig strand B | 534..541 | CDD:409550 | 1/7 (14%) | ||
| Ig strand C | 548..554 | CDD:409550 | 1/5 (20%) | ||
| Ig strand C' | 555..557 | CDD:409550 | 0/1 (0%) | ||
| Ig strand D | 564..568 | CDD:409550 | 0/3 (0%) | ||
| Ig strand E | 571..577 | CDD:409550 | 2/5 (40%) | ||
| Ig strand F | 585..593 | CDD:409550 | 4/7 (57%) | ||
| Ig strand G | 597..607 | CDD:409550 | 1/9 (11%) | ||
| Ig | 610..703 | CDD:472250 | 28/100 (28%) | ||
| Ig strand B | 629..633 | CDD:409353 | 0/3 (0%) | ||
| Ig strand C | 643..647 | CDD:409353 | 1/3 (33%) | ||
| Ig strand E | 669..673 | CDD:409353 | 2/3 (67%) | ||
| Ig strand F | 683..688 | CDD:409353 | 3/4 (75%) | ||
| Ig strand G | 696..699 | CDD:409353 | 0/2 (0%) | ||
| IgI_7_Dscam | 706..801 | CDD:409546 | 28/105 (27%) | ||
| Ig strand A | 706..710 | CDD:409546 | 2/3 (67%) | ||
| Ig strand A' | 715..719 | CDD:409546 | 0/3 (0%) | ||
| Ig strand B | 722..731 | CDD:409546 | 2/8 (25%) | ||
| Ig strand C | 737..743 | CDD:409546 | 2/5 (40%) | ||
| Ig strand C' | 749..752 | CDD:409546 | 1/2 (50%) | ||
| Ig strand D | 760..763 | CDD:409546 | 0/2 (0%) | ||
| Ig strand E | 766..772 | CDD:409546 | 1/5 (20%) | ||
| Ig strand F | 779..787 | CDD:409546 | 3/7 (43%) | ||
| Ig strand G | 792..801 | CDD:409546 | 2/8 (25%) | ||
| Ig | 804..889 | CDD:472250 | 22/84 (26%) | ||
| Ig strand B | 822..826 | CDD:409353 | 1/3 (33%) | ||
| Ig strand C | 835..839 | CDD:409353 | 0/3 (0%) | ||
| FN3 | <850..1254 | CDD:442628 | 98/465 (21%) | ||
| Ig strand F | 882..887 | CDD:409353 | 2/4 (50%) | ||
| FN3 | 906..999 | CDD:238020 | 24/109 (22%) | ||
| fn3 | 1117..1203 | CDD:394996 | 21/87 (24%) | ||
| FN3 | 1185..>1580 | CDD:442628 | 84/513 (16%) | ||
| FN3 | 1405..1494 | CDD:238020 | 18/96 (19%) | ||
| Robo3 | XP_063121496.1 | None | |||
| Blue background indicates that the domain is not in the aligned region. | |||||