DRSC/TRiP Functional Genomics Resources

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Protein Alignment Dscam4 and sdk

DIOPT Version :9

Sequence 1:NP_001261571.1 Gene:Dscam4 / 2769008 FlyBaseID:FBgn0263219 Length:1935 Species:Drosophila melanogaster
Sequence 2:NP_001284756.1 Gene:sdk / 31017 FlyBaseID:FBgn0021764 Length:2265 Species:Drosophila melanogaster


Alignment Length:2378 Identity:504/2378 - (21%)
Similarity:818/2378 - (34%) Gaps:722/2378 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    19 ETSQFVNGLDLQGPIFLHEPPHRVEF-SNNSGGLIECSGHGSPPPEVEWTPIPPQQDMVFQLSNG 82
            :.:..|....||.|.|...|...... |..|..:::|...|.|.|...|            |.:|
  Fly    59 QQNSIVQQQQLQAPRFTTHPSSSGSIVSEGSTKILQCHALGYPQPTYRW------------LKDG 111

  Fly    83 -------SMMFYPFTAEKYRHEVHATVYRCKLRNLVGTVLSRE----VHVRGVVNQKYAVQVHDE 136
                   |..||.|  ...|.| .|..|:|..||..|::.|.:    |...|:.......::   
  Fly   112 VPVGDFSSSQFYRF--HSTRRE-DAGSYQCIARNDAGSIFSEKSDVVVAYMGIFENTTEGRL--- 170

  Fly   137 YVMTGNTAVL------KCQVPSYMSEFVLVTAWVQDTGMHLYP-NTDIGGKYTVLSNGELYINNA 194
            .|::|:.|:.      ...|||.|        |..:.|    | |.||  ||......:|.|.:|
  Fly   171 TVISGHPAIFDMPPIESIPVPSVM--------WQSEDG----PLNYDI--KYAFTHANQLIILSA 221

  Fly   195 GPNDAYKSYTCRTVNRLTGEVQISTYPGRIIVTEPKGMVQPRINVEKHSMRHVVLNGQTTLPCIA 259
            ..||. |.|..:.:|...|:.:.|.:....:..:|...|.|.|.|....::..|..|...|.|||
  Fly   222 DENDR-KGYRAKAINTQLGKEESSAFVHLNVSGDPYIEVAPEIIVRPQDVKVKVGTGVVELQCIA 285

  Fly   260 QGHPVPTYRWFKEENEQLLPLQLSERITIVSAGL-----------LKITKARLEDSGKYLCWVN- 312
            ...|:          .:|..|.|.:.:.:.:||:           |.:.:|....||:|.|.|. 
  Fly   286 NARPL----------HELETLWLKDGLAVETAGVRHTLNDPWNRTLALLQANSSHSGEYTCQVRL 340

  Fly   313 NTAGEETIQVS--LTVTAPLTAHLQPQVQTV-DVDKDAQFQCIVSGHPVHDVNWLHDGKPI---L 371
            .:.|...:..|  |.:..|.......:.:|. :.....|..|.|.|.|...|.|..:.:.:   :
  Fly   341 RSGGYPAVSASARLQILEPPLFFTPMRAETFGEFGGQVQLTCDVVGEPTPQVKWFRNAESVDAHI 405

  Fly   372 RDNRVEILTDPPRLIIKKVQKEDPGMYQCFVSNE--------WEQIQS-TAELQLGD-ASPELL- 425
            ...|..:.|| ..|:|||:..:|..|:||...||        |.:::: ||:.::.. |.|.:| 
  Fly   406 ESGRYTLNTD-NTLVIKKLILDDAAMFQCLAINEAGENSASTWLRVKTKTAKNRVKRLAQPRILR 469

  Fly   426 ------------------------YWFSEQ----------TLQPGPTVSLKCVATGNPLPQFTWS 456
                                    :.|:..          |...|...::.|.|.|:|.|..||.
  Fly   470 VRASHAGLGSEKGSESGSSDRRKEFRFASAPIMELPPQNVTALDGKDATISCRAVGSPNPNITWI 534

  Fly   457 LDGFPIPD-SSRFLVGQYVTIHDDVISHVNISNVKEEDGGEYTCTAQNAIGKVSHSAKVNIYGLP 520
            .:...:.| |||..:.:    ..|::    |||::..|.|.|.|...|..|.|...|.:::....
  Fly   535 YNETQLVDISSRVQILE----SGDLL----ISNIRSVDAGLYICVRANEAGSVKGEAYLSVLVRT 591

  Fly   521 YIREMP-KITGISGSDLIVKCPVAG-----YPIDKIHWERDGQ-TLPINRRQR--AYNNGTLIIE 576
            .|.:.| ..|.:.|....::|.|:.     |.||   |.|:|| :.||:..||  ...:|.|.| 
  Fly   592 QIIQPPVDTTVLLGLTATLQCKVSSDPSVPYNID---WYREGQSSTPISNSQRIGVQADGQLEI- 652

  Fly   577 QLQRLEDAGTYTCMAQN---KQKQTSRRNVEIQVLVPPKIMPIQAMTNMLREGMRAAISCQI--- 635
            |..|..|.|:|.|:..:   .:.:.:|.:| |::..||..:.::    .|.|..:.:|:...   
  Fly   653 QAVRASDVGSYACVVTSPGGNETRAARLSV-IELPFPPSNVKVE----RLPEPQQRSINVSWTPG 712

  Fly   636 LEGDLPVS-FRWERN--------GKPLIGTGNEVFRRLDEYSAS---LVIEHISSDHSGNYTCIA 688
            .:|:.|:| |..:|.        ..||:....|    |...||.   :::|::.:.....:...|
  Fly   713 FDGNSPISKFIIQRREVSELGPVPDPLLNWITE----LSNVSADQRWILLENLKAATVYQFRVSA 773

  Fly   689 SNVAGTERFTVPLTV--------NVPPKWILEPKDSSAQAGADVLLHCQSSGYPTPTITWKKAIG 745
            .|..|....:.|..|        :.||...:    .||::.::::..                  
  Fly   774 VNRVGEGSPSEPSNVVELPQEAPSGPPVGFV----GSARSMSEIITQ------------------ 816

  Fly   746 PTPGEYKDFLYEPTVQLFPNGTIF-----------------FKKISKESQGHFLCE--------- 784
                      ::|.::...||.|.                 ::.|:.|:|.:||.:         
  Fly   817 ----------WQPPLEEHRNGQILGYILRYRLFGYNNVPWSYQNITNEAQRNFLIQELITWKDYI 871

  Fly   785 ----AKNNIGSGV----SKVIFLKVNVPAHFQTKTKQISVAKGKQVHVQC-----NVQGDNPIDF 836
                |.||:|.||    || |..|..||....|..|..::   .....:|     |.|..|.|:.
  Fly   872 VQIAAYNNMGVGVYTEGSK-IKTKEGVPEAPPTNVKVEAI---NSTAARCRWTPPNPQQINGINQ 932

  Fly   837 KWKIQATQQYLDESLDSRY--------TIRDQVLD---------DGM--VSELGISHTYRQDTGI 882
            .:||||.|:.|   :|..:        |:...::|         .|:  .:|..||.....|.|.
  Fly   933 GYKIQAWQRRL---IDGEWRDIERRMKTVPPSLIDPLAEQTAILGGLEKFTEYNISVLCFTDPGD 994

  Fly   883 YICQASNAFGQDEMSIQLIVQEVPEQPKNLRINSQQSRSLQLTWSQPFAGNSPIEEYHIYYKQIS 947
            .:..:..|.        :.:.:||::...|..:....||:::.|:.|.|.|..:..|.:.| |:.
  Fly   995 GVASSQVAV--------MTMDDVPDEVTGLHFDDVSDRSVKVLWAPPRASNGILTGYTVRY-QVK 1050

  Fly   948 DIWQNAEHLTIAGAQTVINIQQLR----------------------------------------- 971
            |.....:...:....|.:.:.||:                                         
  Fly  1051 DRPDTLKSFNLTADDTELTVNQLQATTHYWFEIVAWTRVGSGIPKTATIQSGVEPVLPHAPTALA 1115

  Fly   972 ----------------------------------------------------------PAKAYHI 978
                                                                      |...|.:
  Fly  1116 LSNIEAFSVVLQFTPGFDGNSSITKWKVEGQTARNMTWFTICEINDPDAETLTVTGLVPFTQYRL 1180

  Fly   979 RMSAENKLGASEFSEVVQ-VTTLEEVPSGPPLAVRAEPKSSTEIFVTWDAPERDHWNGILLGYYV 1042
            |:||.|.:|:|:.||..: ..|::..|..||..|.....|:.::.|.|...::..|.|...||.:
  Fly  1181 RLSASNVVGSSKPSEATKDFQTIQARPKHPPFNVTVRAMSAQQLRVRWIPLQQTEWYGNPRGYNI 1245

  Fly  1043 GY-QMSLTPEDKEVNPTQGFSFKTVEVRSHFGGETVLANLNKFTQYHVIVQAYTSQGSGPPSKEI 1106
            .| |:..||...:..|      ::|.:..|.....||.:|.::|.|.|.:.|....|....|...
  Fly  1246 SYKQLVKTPGTIKYVP------RSVVIEDHTANSHVLDSLEEWTLYEVKMNACNDVGCSKESDTA 1304

  Fly  1107 AVQTMEDVPSSPPESPQCDVLGSTSIYITWSPPDIDGQNGKIKGYKVFYISVDE----LYETDPE 1167
            ..:|.|.|||..|...|.:...||::.:.|.......:||:|.||||||.:.|.    |::|.|.
  Fly  1305 VERTREAVPSYGPLDVQANATSSTTVVVQWGEVPRQHRNGQIDGYKVFYAAADRGQQVLHKTIPN 1369

  Fly  1168 VVKSTNQYVTIENLRKYTNYTVWVLAYTKVGDG-MKTKPFYCRTHEDVPSAPQAIKAIPASSSKI 1231
            ....|   .|:..|:||..|.|.|||||::|:| :.|.|...:|.||.|..|..:.....|.:..
  Fly  1370 NATFT---TTLTELKKYVVYHVQVLAYTRLGNGALSTPPIRVQTFEDTPGVPSNVSFPDVSLTMA 1431

  Fly  1232 IISWLPPDLPNGDITGY--TFYM---SMLEGGREEGTHKRLLGPFVEMHETVRTQE---SATYQF 1288
            .|.|..|..|||.|..|  |:.:   :||...||          |.....|.|..|   ...|.|
  Fly  1432 RIIWDVPVDPNGKILAYQVTYTLNGSAMLNYSRE----------FPPSDRTFRATELLPGKYYSF 1486

  Fly  1289 WLTASTKMGEG-------------EKTQVVTVP--PNNKVPARIVSFSQRIVTPWKEHL------ 1332
            ..||.|::|.|             |:.|..:||  ..:::.|..::||.   ||.::..      
  Fly  1487 SCTAQTRLGWGKIATALVYTTNNRERPQAPSVPQISRSQIQAHQITFSW---TPGRDGFAPLRYY 1548

  Fly  1333 ------------ELPCR---------KVG----------------------------------AP 1342
                        .||.|         .||                                  ||
  Fly  1549 TVEMRENEGRWQPLPERVDPSLSSFTAVGLRPYMTYQFRIQATNDLGPSAFSRESVIVRTLPAAP 1613

  Fly  1343 A---------PVTIWRQDGHNMETSARKTIAKNG--------TLYMKECQASDAGNYTCSVENT- 1389
            |         |:|   .....::.||.:|...||        .||.   |.||   :..::::| 
  Fly  1614 AVGVGGLKVVPIT---TTSVRVQWSALETALWNGDASTGGYRILYQ---QLSD---FPTALQSTP 1669

  Fly  1390 ------WGKDEIV---------YNIVV---------------------KVP---PEAPNLTVINA 1415
                  ..::.:|         |.|||                     .||   |.|.:...|::
  Fly  1670 KTDVHGINENSVVLSDLQQDRNYEIVVLPFNSQGPGPATPPAAVYVGEAVPTGEPRAVDAAPISS 1734

  Fly  1416 YTDSLLLEWMDNSHGGSPILGYVINY--------KRDNGDW-EELQVDSKT-TSHLLTNLWCGTR 1470
            ....||.:....|.....||||.|.|        ......| ||::|.|.| |||.|..|...|.
  Fly  1735 TEVRLLWKPPKQSMQNGDILGYKIYYLVTYSPQALEPGRKWEEEIEVVSATATSHSLVFLDKFTE 1799

  Fly  1471 YQLYITAYNKIGTGLPCDIVNSYTKGNPPVQPKH------------------------------- 1504
            |::.:.|:|..|.|.....:...|....|..|.|                               
  Fly  1800 YRIQLLAFNPAGDGPRSAPITVKTLPGVPSAPLHLRFSDITMQSLEVTWDPPKFLNGEILGYLVT 1864

  Fly  1505 --------------SQMITNNS-------------------TSV--------------------- 1515
                          .|.::|.:                   |||                     
  Fly  1865 YETTEENEKFSKQVKQKVSNTTLRVQNLEEEVTYTFTVRAQTSVDYGPGISENVTTGPQDGSPVA 1929

  Fly  1516 ------TCWLDS----WGDGGCG---ILYFMIESRVYGRSSWAVVSNHIPPTERIYTVS--DLVP 1565
                  |..|.|    |.:|..|   ||.::||::....|.|..:........:.:|||  .|:|
  Fly  1930 PRDLILTKTLSSVEMHWINGPSGRGPILGYLIEAKKRDDSRWTKIEQTRKGMMQDFTVSYHILMP 1994

  Fly  1566 GTKYQLKVTAHNNAGSTTAIYNFTTLSTQGVIYNNDHSTPVSHLSDLPFYANFKLLLPICFSLLM 1630
            .|.|..:|.|:|..|.:..:|:..::.|...::     ....:|...|||.....::.:..:.::
  Fly  1995 STAYTFRVIAYNRYGISFPVYSKDSILTPSKLH-----LEYGYLQHKPFYRQTWFMVSLAATSIV 2054

  Fly  1631 LLALIGAALFLRKRKLASQARLASSSMSESPSLANLQNKQNRDQQYLAVRCNPGTSAPRGSNSND 1695
            ::.::.|.|.: |.|.....:.|..::.||.:: ::..:|....:....|...||.......:..
  Fly  2055 IIVMVIAVLCV-KSKSYKYKQEAQKTLEESMAM-SIDERQELALELYRSRHGVGTGTLNSVGTLR 2117

  Fly  1696 SGSFGKAEGNEYIEDICPYATFQLNKQTYSESSYSGNVYSGPYHSVRGSFVYH-DVKPESYHSKE 1759
            ||:.|                 .|.:::.|......::...|......|..|| |.:....:.:.
  Fly  2118 SGTLG-----------------TLGRKSTSRPPPGVHLGKSPPRPSPASVAYHSDEESLKCYDEN 2165

  Fly  1760 PEYTKVRRKVGRLRDPHSESQESDNPGSTDSEVRKILTLHIPITEYDTLGSESDNDVSARALNSA 1824
            |:.:.|..|...:    |.|:.|.:..|.:..||.  ..|..:..|..:     ||...::....
  Fly  2166 PDDSSVTEKPSEV----SSSEASQHSESENESVRS--DPHSFVNHYANV-----NDSLRQSWKKT 2219

  Fly  1825 K----YRAQRDTQDETS-----SSSETTPTSMTRKSKP 1853
            |    |.:..|::.|.|     :..:....:|.|...|
  Fly  2220 KPVRNYSSYTDSEPEGSAVMSLNGGQIIVNNMARSRAP 2257

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Dscam4NP_001261571.1 Ig 31..124 CDD:416386 26/104 (25%)
Ig strand A 32..35 CDD:409353 1/2 (50%)
Ig strand A' 41..45 CDD:409353 0/4 (0%)
Ig strand B 48..57 CDD:409353 2/8 (25%)
Ig strand D 75..78 CDD:409353 0/2 (0%)
Ig strand E 83..88 CDD:409353 2/4 (50%)
Ig strand F 101..109 CDD:409353 2/7 (29%)
Ig strand G 112..124 CDD:409353 3/15 (20%)
Ig 235..326 CDD:416386 25/104 (24%)
Ig strand A 235..238 CDD:409353 1/2 (50%)
Ig strand A' 244..248 CDD:409353 0/3 (0%)
Ig strand B 251..258 CDD:409353 2/6 (33%)
Ig strand C 266..271 CDD:409353 0/4 (0%)
Ig strand C' 276..279 CDD:409353 1/2 (50%)
Ig strand D 285..289 CDD:409353 0/3 (0%)
Ig strand E 292..298 CDD:409353 2/16 (13%)
Ig strand F 305..313 CDD:409353 4/8 (50%)
Ig strand G 316..326 CDD:409353 3/11 (27%)
IgC2_3_Dscam 329..417 CDD:409549 25/100 (25%)
Ig strand B 347..351 CDD:409549 1/3 (33%)
Ig strand C 360..364 CDD:409549 1/3 (33%)
Ig strand E 383..387 CDD:409549 1/3 (33%)
Ig strand F 397..402 CDD:409549 3/4 (75%)
Ig strand G 410..413 CDD:409549 0/3 (0%)
IgI_4_Dscam 422..516 CDD:409548 28/129 (22%)
Ig strand B 439..443 CDD:409548 0/3 (0%)
Ig strand C 452..456 CDD:409548 1/3 (33%)
Ig strand E 482..486 CDD:409548 0/3 (0%)
Ig strand F 496..501 CDD:409548 2/4 (50%)
Ig strand G 509..512 CDD:409548 0/2 (0%)
IgI_5_Dscam 520..607 CDD:409550 29/98 (30%)
Ig strand B 536..540 CDD:409550 0/3 (0%)
Ig strand C 549..553 CDD:409550 0/3 (0%)
Ig strand E 571..575 CDD:409550 2/3 (67%)
Ig strand F 586..591 CDD:409550 2/4 (50%)
Ig strand G 600..603 CDD:409550 1/2 (50%)
Ig 610..703 CDD:416386 21/107 (20%)
Ig strand A 611..613 CDD:409353 1/1 (100%)
Ig strand A' 620..624 CDD:409353 0/3 (0%)
Ig strand B 627..636 CDD:409353 1/11 (9%)
Ig strand C 641..648 CDD:409353 3/7 (43%)
Ig strand C' 650..652 CDD:409353 0/1 (0%)
Ig strand D 659..664 CDD:409353 1/4 (25%)
Ig strand E 668..675 CDD:409353 2/9 (22%)
Ig strand F 682..690 CDD:409353 1/7 (14%)
Ig strand G 693..702 CDD:409353 2/8 (25%)
IgI_7_Dscam 706..801 CDD:409546 22/128 (17%)
Ig strand B 724..728 CDD:409546 0/3 (0%)
Ig strand C 737..741 CDD:409546 0/3 (0%)
Ig strand E 766..770 CDD:409546 2/20 (10%)
Ig strand F 780..785 CDD:409546 2/17 (12%)
Ig strand G 794..797 CDD:409546 2/2 (100%)
Ig 818..904 CDD:416386 21/109 (19%)
putative Ig strand B 820..827 CDD:409353 1/11 (9%)
putative Ig strand C 835..841 CDD:409353 1/5 (20%)
putative Ig strand C' 853..856 CDD:409353 0/10 (0%)
putative Ig strand D 862..866 CDD:409353 1/12 (8%)
putative Ig strand E 868..874 CDD:409353 2/5 (40%)
putative Ig strand F 881..889 CDD:409353 1/7 (14%)
putative Ig strand G 892..902 CDD:409353 0/9 (0%)
FN3 906..999 CDD:238020 25/192 (13%)
FN3 1006..1110 CDD:238020 26/104 (25%)
fn3 1117..1203 CDD:394996 32/90 (36%)
FN3 1215..1307 CDD:238020 29/112 (26%)
Ig <1334..1401 CDD:416386 24/142 (17%)
Ig strand C 1345..1349 CDD:409353 1/3 (33%)
Ig strand D 1363..1366 CDD:409353 0/2 (0%)
Ig strand E 1367..1372 CDD:409353 3/12 (25%)
Ig strand F 1380..1388 CDD:409353 0/7 (0%)
Ig strand G 1394..1401 CDD:409353 3/15 (20%)
FN3 1405..1494 CDD:238020 29/98 (30%)
FN3 1499..1580 CDD:238020 30/180 (17%)
sdkNP_001284756.1 Ig 71..157 CDD:299845 25/100 (25%)
I-set 72..150 CDD:254352 24/92 (26%)
Ig 172..245 CDD:299845 24/87 (28%)
IG_like 280..356 CDD:214653 20/85 (24%)
Ig 280..343 CDD:299845 17/72 (24%)
IG_like 375..450 CDD:214653 21/75 (28%)
Ig 378..447 CDD:143165 20/69 (29%)
Ig 506..587 CDD:299845 25/88 (28%)
IG_like 506..587 CDD:214653 25/88 (28%)
I-set 592..682 CDD:254352 27/93 (29%)
Ig 595..682 CDD:299845 26/90 (29%)
FN3 686..789 CDD:238020 21/110 (19%)
FN3 798..893 CDD:238020 22/127 (17%)
FN3 901..1005 CDD:238020 23/117 (20%)
fn3 1011..1094 CDD:278470 14/83 (17%)
FN3 1108..1202 CDD:238020 10/93 (11%)
FN3 1210..1308 CDD:238020 26/103 (25%)
fn3 1317..1402 CDD:278470 32/87 (37%)
FN3 1415..1507 CDD:238020 27/101 (27%)
FN3 1513..1608 CDD:238020 13/97 (13%)
fn3 1617..1708 CDD:278470 18/99 (18%)
FN3 1722..1823 CDD:238020 29/100 (29%)
FN3 1828..1920 CDD:238020 8/91 (9%)
FN3 1927..2016 CDD:238020 23/88 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 46 1.000 Domainoid score I8189
eggNOG 1 0.900 - - E1_KOG3510
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.810

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