DRSC/TRiP Functional Genomics Resources

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Protein Alignment Dscam4 and NEGR1

DIOPT Version :9

Sequence 1:NP_001261571.1 Gene:Dscam4 / 2769008 FlyBaseID:FBgn0263219 Length:1935 Species:Drosophila melanogaster
Sequence 2:NP_776169.2 Gene:NEGR1 / 257194 HGNCID:17302 Length:354 Species:Homo sapiens


Alignment Length:496 Identity:103/496 - (20%)
Similarity:155/496 - (31%) Gaps:197/496 - (39%)


- Green bases have known domain annotations that are detailed below.


  Fly   247 VVLNGQTTLP-CIAQGHPVPTYRWFKEENEQLLPLQLSERITIVSAGLLKITKARLEDSGKYLCW 310
            |:|:....|| |:..|..| .:.|...:|            .:|..|...:.:..|||......|
Human    20 VLLSLCCLLPSCLPAGQSV-DFPWAAVDN------------MMVRKGDTAVLRCYLEDGASKGAW 71

  Fly   311 VNNTAGEETIQVSLTVTAPLTAHLQPQVQTVDVDKDAQFQCIVSGHPVHDVNWLHDGKPILRDNR 375
            :|.::                                   .|.:|.....|           |.|
Human    72 LNRSS-----------------------------------IIFAGGDKWSV-----------DPR 90

  Fly   376 VEILTDPPR---LIIKKVQKEDPGMYQCFVSNEWEQIQSTAELQLGDASPELLYWFS-EQTLQPG 436
            |.|.|...|   |.|:.|...|.|.|.|.|  :.:....|.::.|....|..:|..| :.|:..|
Human    91 VSISTLNKRDYSLQIQNVDVTDDGPYTCSV--QTQHTPRTMQVHLTVQVPPKIYDISNDMTVNEG 153

  Fly   437 PTVSLKCVATGNPLPQFTWSLDGFPIPDSSRFLVGQYVTIHDDVISHVNISNVKEEDGGEYTCTA 501
            ..|:|.|:|||.|.|..:|.   ...|.:..|..|||:.|:          .:..:..|||.|:|
Human   154 TNVTLTCLATGKPEPSISWR---HISPSAKPFENGQYLDIY----------GITRDQAGEYECSA 205

  Fly   502 QNAIG-----KVSHSAKVNIYGLPYIREMPKITGISGSDLIVKCPVAGYPIDKIHWERDGQTLPI 561
            :|.:.     ||    ||.:...|.|:|:...|...|...:::|..||.|               
Human   206 ENDVSFPDVRKV----KVVVNFAPTIQEIKSGTVTPGRSGLIRCEGAGVP--------------- 251

  Fly   562 NRRQRAYNNGTLIIEQLQRLEDAGTYTCMAQNKQKQTSRRNVEIQVLVPPKIMPIQAMTNMLREG 626
                                                                             
Human   252 ----------------------------------------------------------------- 251

  Fly   627 MRAAISCQILEGDLPVSFRWERNGKPLIGTGNEVFRRLDEYSASLVIEHISSDHSGNYTCIASNV 691
                          |.:|.|.:..|.|......:..:.....:.|.:.:::.:|.|||||:|:|.
Human   252 --------------PPAFEWYKGEKKLFNGQQGIIIQNFSTRSILTVTNVTQEHFGNYTCVAANK 302

  Fly   692 AGTERFTVPLTVNVPPKWILEPKDSSAQAG----ADVLLHC 728
            .||...::||.   ||        |:||.|    ||||..|
Human   303 LGTTNASLPLN---PP--------STAQYGITGSADVLFSC 332

Known Domains:


Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

GeneSequenceDomainRegion External IDIdentity
Dscam4NP_001261571.1 Ig 31..124 CDD:416386
Ig strand A 32..35 CDD:409353
Ig strand A' 41..45 CDD:409353
Ig strand B 48..57 CDD:409353
Ig strand D 75..78 CDD:409353
Ig strand E 83..88 CDD:409353
Ig strand F 101..109 CDD:409353
Ig strand G 112..124 CDD:409353
Ig 235..326 CDD:416386 16/79 (20%)
Ig strand A 235..238 CDD:409353