Sequence 1: | NP_001261571.1 | Gene: | Dscam4 / 2769008 | FlyBaseID: | FBgn0263219 | Length: | 1935 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_501339.2 | Gene: | rig-4 / 177597 | WormBaseID: | WBGene00004371 | Length: | 2325 | Species: | Caenorhabditis elegans |
Alignment Length: | 2114 | Identity: | 449/2114 - (21%) |
---|---|---|---|
Similarity: | 742/2114 - (35%) | Gaps: | 606/2114 - (28%) |
- Green bases have known domain annotations that are detailed below.
Fly 103 YRCKLRNLVGTVLSREVHVRGVVNQKYA--VQVHDEYVM----TGNTAVLKCQVPSYMS--EFVL 159
Fly 160 VTAWVQDTGMHLYPNTDIGGKYTVLSNGELYINNAGPND--AYKSYTCRTVNRLTGEVQISTYPG 222
Fly 223 RIIVTEPKGMVQPRINVEKHSMRHVVLNG-------------QTTLP------CIAQ--GHPVPT 266
Fly 267 YRWFKEENEQLLPLQLSERITIVSAGLL-----KITKA--RLEDSGKYLCWVNNTAGEETIQVSL 324
Fly 325 TVT---APLTAHLQPQVQTVDVDKDAQFQCIVSGHPVHDVNWLHDGKPILRDNRVEILTDPPRLI 386
Fly 387 IKKVQKEDPGMYQCFVSN------------EWEQIQSTA------------ELQLGDASPELLYW 427
Fly 428 F----SEQTLQPGPT-----------------------VSLKCVATGNPLPQFTWSLDGFPI-PD 464
Fly 465 SSRF-LVGQYVTIHDDVISHVNISNVKEEDGGEYTCTAQNAIGKVSHSAKVNIYGLPYIREMP-K 527
Fly 528 ITGISGSDLIVKCPVAGYPIDK--IHWERDGQTLPIN-------RRQRAYNNGTLIIEQLQRLED 583
Fly 584 AGTYTC--MAQNKQKQTSRRNVEIQVLVPPKIMPIQAMTNMLREGMRAAISC---QILEGDLPV- 642
Fly 643 -----------SFRW-----------ERNGKPLIGTGNEVFRRLDEYSASLVIEHISSDHSGNYT 685
Fly 686 CIASNVAGTERFTVP---LTV-NVPPKWILEPKDSSAQA------------------GADVL--- 725
Fly 726 LHCQSSGYPTPT-------------------ITWKKAIGPTPGEYKDFLYEPTVQLF-PNGT-IF 769
Fly 770 FKKISKESQGHFLCEAKNNIGSGVSKVIFLKVNVPAHFQTKTKQISVA-----------KG---K 820
Fly 821 QVHVQ------------------------C-NVQGDNPIDFKWKIQATQQYLDESLD-------- 852
Fly 853 ------------------SRYTIRDQVLD----------DGMVSELGISHTYRQDTGIYICQASN 889
Fly 890 AFGQDEMSIQL--------------IVQEVPEQPKNLRINSQQSRSLQLTWSQPFAGNSPIEEYH 940
Fly 941 IYYKQI-SDIWQNAEHLTIAGAQTVINIQQLRPAKAYHIRMSAENKLGASEFSEVVQ-VTTLEEV 1003
Fly 1004 PSGPPLAVRAEPKSSTEIFVTWDAPERDHWNGILLGYYVGYQMSLTPEDKEVNPTQGFSFKTVEV 1068
Fly 1069 RSHFGGETVLANLNKFTQYHVIVQAYTSQGSGPPSKEIAVQTMEDVPSSPPESPQCDVLGSTSIY 1133
Fly 1134 ITWSPPDIDGQNGKIKGYKVFYISVDE-LYETDPEVVKSTNQ---YVTIENLRKYTNYTVWVLAY 1194
Fly 1195 TKVGDGMK-TKPFYCRTHEDVPSAPQAIKAIPASSSKIIISWLPPDLPNGDITGYTFYMSMLEGG 1258
Fly 1259 REEGTHKRLLGPFVEMHETVRTQESATYQFWLTASTKMGEGEK------TQVVTVPPNNKVPARI 1317
Fly 1318 -VSFSQ----RIVTPWKEHL--------ELPCR-------KVGAPAPVTIWRQDGHNMETSARKT 1362
Fly 1363 IAKNGTLYMKECQASDAGNYTCSVENTWGKDEIVYNIVVKVPPEAP-----NLTVINAYTDSLLL 1422
Fly 1423 EWM--DNSHGGSPILGYVINYKR--DNGDW--EELQVDSK---TTSHLLTNLWCGTRYQLYITAY 1478
Fly 1479 NKIGTGLPCDIVNSYTKGNPPVQPKHSQMITN--NSTSVTCWLDSWGD------GGCGILYFMIE 1535
Fly 1536 SRVYGRSSWAVVSNHIPPTERIY-------TVSDLVPGTKYQLKVTAHNNAGSTTAIYNFTTLST 1593
Fly 1594 QGVIYNNDHSTPVSHLSDLPFYANFKLLLPICFSLLMLLALIGAALFLRKRKLASQARLASSSMS 1658
Fly 1659 -ESPSLAN--------------LQNK-QNRDQQYLAVRCNPGTSAPRGSNSNDSGSFGKAEGNEY 1707
Fly 1708 IEDICPYATFQLNKQTYSESS------YSGNVYSGPYHSVRG-------------SFV---YHDV 1750
Fly 1751 -------------KPESYHSKEPE--YTKVRRKVGRLRDPHSESQESDNPGSTDSEVRKILTLHI 1800
Fly 1801 PITEYDTL----GSESDNDVSARALNSAKYRAQR 1830 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
Dscam4 | NP_001261571.1 | Ig | 31..124 | CDD:416386 | 8/20 (40%) |
Ig strand A | 32..35 | CDD:409353 | |||
Ig strand A' | 41..45 | CDD:409353 | |||
Ig strand B | 48..57 | CDD:409353 | |||
Ig strand D | 75..78 | CDD:409353 | |||
Ig strand E | 83..88 | CDD:409353 | |||
Ig strand F | 101..109 | CDD:409353 | 3/5 (60%) | ||
Ig strand G | 112..124 | CDD:409353 | 2/11 (18%) | ||
Ig | 235..326 | CDD:416386 | 20/118 (17%) | ||
Ig strand A | 235..238 | CDD:409353 | 0/2 (0%) | ||
Ig strand A' | 244..248 | CDD:409353 | 0/3 (0%) | ||
Ig strand B | 251..258 | CDD:409353 | 3/25 (12%) | ||
Ig strand C | 266..271 | CDD:409353 | 2/4 (50%) | ||
Ig strand C' | 276..279 | CDD:409353 | 1/2 (50%) | ||
Ig strand D | 285..289 | CDD:409353 | 1/3 (33%) | ||
Ig strand E | 292..298 | CDD:409353 | 1/10 (10%) | ||
Ig strand F | 305..313 | CDD:409353 | 1/7 (14%) | ||
Ig strand G | 316..326 | CDD:409353 | 3/9 (33%) | ||
IgC2_3_Dscam | 329..417 | CDD:409549 | 22/111 (20%) | ||
Ig strand B | 347..351 | CDD:409549 | 0/3 (0%) | ||
Ig strand C | 360..364 | CDD:409549 | 1/3 (33%) | ||
Ig strand E | 383..387 | CDD:409549 | 1/3 (33%) | ||
Ig strand F | 397..402 | CDD:409549 | 3/4 (75%) | ||
Ig strand G | 410..413 | CDD:409549 | 0/2 (0%) | ||
IgI_4_Dscam | 422..516 | CDD:409548 | 30/122 (25%) | ||
Ig strand B | 439..443 | CDD:409548 | 0/3 (0%) | ||
Ig strand C | 452..456 | CDD:409548 | 0/3 (0%) | ||
Ig strand E | 482..486 | CDD:409548 | 0/3 (0%) | ||
Ig strand F | 496..501 | CDD:409548 | 4/4 (100%) | ||
Ig strand G | 509..512 | CDD:409548 | 0/2 (0%) | ||
IgI_5_Dscam | 520..607 | CDD:409550 | 22/98 (22%) | ||
Ig strand B | 536..540 | CDD:409550 | 0/3 (0%) | ||
Ig strand C | 549..553 | CDD:409550 | 1/5 (20%) | ||
Ig strand E | 571..575 | CDD:409550 | 2/3 (67%) | ||
Ig strand F | 586..591 | CDD:409550 | 2/6 (33%) | ||
Ig strand G | 600..603 | CDD:409550 | 0/2 (0%) | ||
Ig | 610..703 | CDD:416386 | 20/121 (17%) | ||
Ig strand A | 611..613 | CDD:409353 | 1/1 (100%) | ||
Ig strand A' | 620..624 | CDD:409353 | 0/3 (0%) | ||
Ig strand B | 627..636 | CDD:409353 | 2/11 (18%) | ||
Ig strand C | 641..648 | CDD:409353 | 2/29 (7%) | ||
Ig strand C' | 650..652 | CDD:409353 | 1/1 (100%) | ||
Ig strand D | 659..664 | CDD:409353 | 0/4 (0%) | ||
Ig strand E | 668..675 | CDD:409353 | 1/6 (17%) | ||
Ig strand F | 682..690 | CDD:409353 | 1/7 (14%) | ||
Ig strand G | 693..702 | CDD:409353 | 2/11 (18%) | ||
IgI_7_Dscam | 706..801 | CDD:409546 | 23/136 (17%) | ||
Ig strand B | 724..728 | CDD:409546 | 2/6 (33%) | ||
Ig strand C | 737..741 | CDD:409546 | 3/22 (14%) | ||
Ig strand E | 766..770 | CDD:409546 | 1/4 (25%) | ||
Ig strand F | 780..785 | CDD:409546 | 0/4 (0%) | ||
Ig strand G | 794..797 | CDD:409546 | 0/2 (0%) | ||
Ig | 818..904 | CDD:416386 | 27/163 (17%) | ||
putative Ig strand B | 820..827 | CDD:409353 | 4/31 (13%) | ||
putative Ig strand C | 835..841 | CDD:409353 | 1/5 (20%) | ||
putative Ig strand C' | 853..856 | CDD:409353 | 0/2 (0%) | ||
putative Ig strand D | 862..866 | CDD:409353 | 1/13 (8%) | ||
putative Ig strand E | 868..874 | CDD:409353 | 1/5 (20%) | ||
putative Ig strand F | 881..889 | CDD:409353 | 2/7 (29%) | ||
putative Ig strand G | 892..902 | CDD:409353 | 3/23 (13%) | ||
FN3 | 906..999 | CDD:238020 | 24/94 (26%) | ||
FN3 | 1006..1110 | CDD:238020 | 29/103 (28%) | ||
fn3 | 1117..1203 | CDD:394996 | 26/90 (29%) | ||
FN3 | 1215..1307 | CDD:238020 | 26/97 (27%) | ||
Ig | <1334..1401 | CDD:416386 | 11/73 (15%) | ||
Ig strand C | 1345..1349 | CDD:409353 | 1/3 (33%) | ||
Ig strand D | 1363..1366 | CDD:409353 | 0/2 (0%) | ||
Ig strand E | 1367..1372 | CDD:409353 | 0/4 (0%) | ||
Ig strand F | 1380..1388 | CDD:409353 | 1/7 (14%) | ||
Ig strand G | 1394..1401 | CDD:409353 | 0/6 (0%) | ||
FN3 | 1405..1494 | CDD:238020 | 26/102 (25%) | ||
FN3 | 1499..1580 | CDD:238020 | 20/95 (21%) | ||
rig-4 | NP_501339.2 | IG_like | 330..402 | CDD:214653 | 16/80 (20%) |
IGc2 | 338..393 | CDD:197706 | 14/62 (23%) | ||
I-set | 459..543 | CDD:254352 | 24/95 (25%) | ||
IGc2 | 478..534 | CDD:197706 | 21/67 (31%) | ||
IG_like | 553..639 | CDD:214653 | 21/92 (23%) | ||
Ig | 564..635 | CDD:143165 | 19/77 (25%) | ||
FN3 | 643..747 | CDD:238020 | 20/119 (17%) | ||
FN3 | 756..850 | CDD:238020 | 18/106 (17%) | ||
FN3 | 858..954 | CDD:238020 | 15/96 (16%) | ||
FN3 | 959..1042 | CDD:238020 | 16/92 (17%) | ||
FN3 | 1057..1151 | CDD:238020 | 24/94 (26%) | ||
FN3 | 1156..1251 | CDD:238020 | 30/105 (29%) | ||
FN3 | 1258..1356 | CDD:238020 | 27/97 (28%) | ||
FN3 | 1361..1453 | CDD:238020 | 24/92 (26%) | ||
FN3 | 1464..1560 | CDD:238020 | 19/95 (20%) | ||
FN3 | 1572..1664 | CDD:238020 | 22/91 (24%) | ||
FN3 | 1679..1764 | CDD:238020 | 22/107 (21%) | ||
FN3 | 1774..1858 | CDD:238020 | 23/135 (17%) | ||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 1 | 0.900 | - | - | E1_KOG3510 | |
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
Isobase | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
2 | 1.810 |