Sequence 1: | NP_001261571.1 | Gene: | Dscam4 / 2769008 | FlyBaseID: | FBgn0263219 | Length: | 1935 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_001022014.1 | Gene: | rig-6 / 173828 | WormBaseID: | WBGene00016354 | Length: | 1196 | Species: | Caenorhabditis elegans |
Alignment Length: | 1371 | Identity: | 269/1371 - (19%) |
---|---|---|---|
Similarity: | 431/1371 - (31%) | Gaps: | 483/1371 - (35%) |
- Green bases have known domain annotations that are detailed below.
Fly 111 VGTVLSREVHVRGVV-------NQKYAVQVHDEYVMTGNTAVLKCQVPSYMSEFVLVTAWVQDTG 168
Fly 169 MHLY------PNTDIGGKYTVLS---NGELYINNAGPNDAYKSYTCRTVNR-------------- 210
Fly 211 -------LTGEVQISTYPGRIIVTEPKGMVQPRINVEKHSMRHVVLNGQTTLPCIAQGHPVPTYR 268
Fly 269 WFKEENEQLLPLQLSERITIVSAGLLKITKARLEDSGKYLCWVNNTAGE---ETIQVSLTVTAPL 330
Fly 331 TAHLQPQVQTVDV----DKDAQFQCIVSGHPVHDV--NWLHDGKP--ILRDNRVEILTDPPRLII 387
Fly 388 KKVQKEDPGMYQC-----------------FVSNEWEQIQSTAELQLGDASPELLYWFSEQTLQP 435
Fly 436 GPTVSLKCVATGNPLPQFTWS-LDGFPIPDSSRFLVGQYVTIHDDVISHVNISNVKEEDGGEYTC 499
Fly 500 TAQNAIGKVSHSAKVNIYGLPYIREMPKITGISGSDLIVKCPVAGYPIDKIHWERDGQTLPINRR 564
Fly 565 QRAYNNGTLIIEQLQRLEDAGTYTCMAQNKQKQTSRRNVEIQVLVPPKIMPIQAMTNMLREGMRA 629
Fly 630 AISCQILEGDLPVSFRWERNGKPLIG--TGNEVFRRLDEYSASLVIEHISSDHSGNYTCIASNVA 692
Fly 693 GTERFTVPLTVNVPPKWILEPKDSS-------------AQAGADVLLHCQSSGYPTPTITWKKAI 744
Fly 745 G---PTPGEYKDFLYEPTVQLFPNGTIFFKKISKESQGHFLCEAKNNIGSGVSKVIFLKVNVPAH 806
Fly 807 FQTKTKQISVAKGKQVHVQCNVQGDNP-IDFKWKI--QATQQYLDESLDSRYTIRDQVLDDGMVS 868
Fly 869 ELGISHTYR-----------------QDTGIYICQASNAFG---------QDEMSIQLIVQEVPE 907
Fly 908 QPKNLRINSQQSRSLQLTWSQP-----FAGNSP-IEEYHIYYK-QISDIWQNAEHLTIAGAQ-TV 964
Fly 965 INIQQLRPAKAYHIRMSAENKLGASEFSEVVQVTTLEEVPSGPPLAVRAEPKSSTE--------- 1020
Fly 1021 -----IFVTWDAPE------------RDHWNGILLGYYVGYQMSLTPEDKE-------------- 1054
Fly 1055 -VNPTQGFSFKTVEVR-------------------------------------SHF--------- 1072
Fly 1073 -----------------GGET-----------VLANLNKFTQYHVIVQAYTSQGS-GPPSKEIAV 1108
Fly 1109 QTMEDVPSSPPESPQCDVLGSTSIYIT---WSPPDID----GQNGKIKGYKVF-YISVDELYETD 1165
Fly 1166 PEVVK----------STNQYVTIENLRKYTNYTVWVLAYTKVGDGMKTKP-----------FYCR 1209
Fly 1210 THEDVP 1215 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
Dscam4 | NP_001261571.1 | Ig | 31..124 | CDD:416386 | 3/12 (25%) |
Ig strand A | 32..35 | CDD:409353 | |||
Ig strand A' | 41..45 | CDD:409353 | |||
Ig strand B | 48..57 | CDD:409353 | |||
Ig strand D | 75..78 | CDD:409353 | |||
Ig strand E | 83..88 | CDD:409353 | |||
Ig strand F | 101..109 | CDD:409353 | |||
Ig strand G | 112..124 | CDD:409353 | 3/11 (27%) | ||
Ig | 235..326 | CDD:416386 | 23/93 (25%) | ||
Ig strand A | 235..238 | CDD:409353 | 0/2 (0%) | ||
Ig strand A' | 244..248 | CDD:409353 | 0/3 (0%) | ||
Ig strand B | 251..258 | CDD:409353 | 2/6 (33%) | ||
Ig strand C | 266..271 | CDD:409353 | 2/4 (50%) | ||
Ig strand C' | 276..279 | CDD:409353 | 1/2 (50%) | ||
Ig strand D | 285..289 | CDD:409353 | 0/3 (0%) | ||
Ig strand E | 292..298 | CDD:409353 | 2/5 (40%) | ||
Ig strand F | 305..313 | CDD:409353 | 1/7 (14%) | ||
Ig strand G | 316..326 | CDD:409353 | 3/12 (25%) | ||
IgC2_3_Dscam | 329..417 | CDD:409549 | 21/112 (19%) | ||
Ig strand B | 347..351 | CDD:409549 | 1/3 (33%) | ||
Ig strand C | 360..364 | CDD:409549 | 0/5 (0%) | ||
Ig strand E | 383..387 | CDD:409549 | 1/3 (33%) | ||
Ig strand F | 397..402 | CDD:409549 | 2/21 (10%) | ||
Ig strand G | 410..413 | CDD:409549 | 1/2 (50%) | ||
IgI_4_Dscam | 422..516 | CDD:409548 | 31/94 (33%) | ||
Ig strand B | 439..443 | CDD:409548 | 1/3 (33%) | ||
Ig strand C | 452..456 | CDD:409548 | 1/3 (33%) | ||
Ig strand E | 482..486 | CDD:409548 | 0/3 (0%) | ||
Ig strand F | 496..501 | CDD:409548 | 2/4 (50%) | ||
Ig strand G | 509..512 | CDD:409548 | 0/2 (0%) | ||
IgI_5_Dscam | 520..607 | CDD:409550 | 6/86 (7%) | ||
Ig strand B | 536..540 | CDD:409550 | 0/3 (0%) | ||
Ig strand C | 549..553 | CDD:409550 | 0/3 (0%) | ||
Ig strand E | 571..575 | CDD:409550 | 0/3 (0%) | ||
Ig strand F | 586..591 | CDD:409550 | 0/4 (0%) | ||
Ig strand G | 600..603 | CDD:409550 | 0/2 (0%) | ||
Ig | 610..703 | CDD:416386 | 20/94 (21%) | ||
Ig strand A | 611..613 | CDD:409353 | 0/1 (0%) | ||
Ig strand A' | 620..624 | CDD:409353 | 0/3 (0%) | ||
Ig strand B | 627..636 | CDD:409353 | 1/8 (13%) | ||
Ig strand C | 641..648 | CDD:409353 | 2/6 (33%) | ||
Ig strand C' | 650..652 | CDD:409353 | 0/1 (0%) | ||
Ig strand D | 659..664 | CDD:409353 | 1/4 (25%) | ||
Ig strand E | 668..675 | CDD:409353 | 1/6 (17%) | ||
Ig strand F | 682..690 | CDD:409353 | 4/7 (57%) | ||
Ig strand G | 693..702 | CDD:409353 | 1/8 (13%) | ||
IgI_7_Dscam | 706..801 | CDD:409546 | 25/110 (23%) | ||
Ig strand B | 724..728 | CDD:409546 | 1/3 (33%) | ||
Ig strand C | 737..741 | CDD:409546 | 0/3 (0%) | ||
Ig strand E | 766..770 | CDD:409546 | 2/3 (67%) | ||
Ig strand F | 780..785 | CDD:409546 | 2/4 (50%) | ||
Ig strand G | 794..797 | CDD:409546 | 0/2 (0%) | ||
Ig | 818..904 | CDD:416386 | 23/114 (20%) | ||
putative Ig strand B | 820..827 | CDD:409353 | 1/6 (17%) | ||
putative Ig strand C | 835..841 | CDD:409353 | 4/7 (57%) | ||
putative Ig strand C' | 853..856 | CDD:409353 | 1/2 (50%) | ||
putative Ig strand D | 862..866 | CDD:409353 | 0/3 (0%) | ||
putative Ig strand E | 868..874 | CDD:409353 | 1/5 (20%) | ||
putative Ig strand F | 881..889 | CDD:409353 | 2/7 (29%) | ||
putative Ig strand G | 892..902 | CDD:409353 | 4/18 (22%) | ||
FN3 | 906..999 | CDD:238020 | 18/100 (18%) | ||
FN3 | 1006..1110 | CDD:238020 | 33/219 (15%) | ||
fn3 | 1117..1203 | CDD:394996 | 25/103 (24%) | ||
FN3 | 1215..1307 | CDD:238020 | 1/1 (100%) | ||
Ig | <1334..1401 | CDD:416386 | |||
Ig strand C | 1345..1349 | CDD:409353 | |||
Ig strand D | 1363..1366 | CDD:409353 | |||
Ig strand E | 1367..1372 | CDD:409353 | |||
Ig strand F | 1380..1388 | CDD:409353 | |||
Ig strand G | 1394..1401 | CDD:409353 | |||
FN3 | 1405..1494 | CDD:238020 | |||
FN3 | 1499..1580 | CDD:238020 | |||
rig-6 | NP_001022014.1 | Ig | 153..237 | CDD:299845 | 25/109 (23%) |
Ig | 240..335 | CDD:299845 | 18/100 (18%) | ||
Ig | 358..427 | CDD:299845 | 28/78 (36%) | ||
IG_like | 363..436 | CDD:214653 | 27/81 (33%) | ||
I-set | 441..534 | CDD:254352 | 26/184 (14%) | ||
IGc2 | 456..524 | CDD:197706 | 17/76 (22%) | ||
I-set | 547..627 | CDD:254352 | 22/89 (25%) | ||
Ig | 552..627 | CDD:299845 | 22/84 (26%) | ||
FN3 | 737..839 | CDD:238020 | 24/121 (20%) | ||
fn3 | 970..1047 | CDD:278470 | 13/76 (17%) | ||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
Isobase | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 1 | 1.100 | - | - | O | PTHR10075 |
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 1 | 1.000 | - | - | ||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
3 | 3.010 |