DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Dscam4 and rig-6

DIOPT Version :9

Sequence 1:NP_001261571.1 Gene:Dscam4 / 2769008 FlyBaseID:FBgn0263219 Length:1935 Species:Drosophila melanogaster
Sequence 2:NP_001022014.1 Gene:rig-6 / 173828 WormBaseID:WBGene00016354 Length:1196 Species:Caenorhabditis elegans


Alignment Length:1371 Identity:269/1371 - (19%)
Similarity:431/1371 - (31%) Gaps:483/1371 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly   111 VGTVLSREVHVRGVV-------NQKYAVQVHDEYVMTGNTAVLKCQVPSYMSEFVLVTAWVQDTG 168
            :|..::.:..||.|:       ::||......|.:.|..|.:|:.               |.|..
 Worm    28 IGWQIASDQCVRIVIAPANLKHSKKYCHHEGGELMDTSVTLLLED---------------VMDLL 77

  Fly   169 MHLY------PNTDIGGKYTVLS---NGELYINNAGPNDAYKSYTCRTVNR-------------- 210
            .:|:      |...:||....|:   :|...|....|:..: .:.| ::|:              
 Worm    78 KNLHENGLSEPTFHVGGMGQALNRTEDGNYKIITINPSSHF-PFIC-SLNKMARRSLLFQQKLLP 140

  Fly   211 -------LTGEVQISTYPGRIIVTEPKGMVQPRINVEKHSMRHVVLNGQTTLPCIAQGHPVPTYR 268
                   |||:.:|..:|                   :|...::      .|||..||:|.||..
 Worm   141 VGAPQISLTGQSEIYFHP-------------------RHDADYI------ALPCTVQGNPKPTVA 180

  Fly   269 WFKEENEQLLPLQLSERITIVSAGLLKITKARLEDSGKYLCWVNNTAGE---ETIQVSLTVTAPL 330
            |:|.:.|.|.| .:|....::|.|.|.:..:.......:.|...|:.||   ..|.:..:...|.
 Worm   181 WYKNDVEVLSP-SMSNVSYLLSGGNLLVPASSTLAYSSFHCTARNSLGEVRSPPILLKPSFIDPF 244

  Fly   331 TAHLQPQVQTVDV----DKDAQFQCIVSGHPVHDV--NWLHDGKP--ILRDNRVEILTDPPRLII 387
            ..|      .:||    ...|:..|....|....:  :||:....  ||..|..:.::....|..
 Worm   245 RPH------RLDVYSLATGGAKLDCDAPAHQPKSLTYSWLYGSSTDRILSQNERKFISLDGTLFF 303

  Fly   388 KKVQKEDPGMYQC-----------------FVSNEWEQIQSTAELQLGDASPELLYWFSEQTLQP 435
            ..|..||...|.|                 .:|:..:.:.||...:|....|::   |.|.. :.
 Worm   304 SYVTAEDEDSYACSLSVYSTQSGHYGPFFRLISSTPKLVNSTFPPKLDSTQPQI---FPEDP-KV 364

  Fly   436 GPTVSLKCVATGNPLPQFTWS-LDGFPIPDSSRFLVGQYVTIHDDVISHVNISNVKEEDGGEYTC 499
            |.::.|:|.|..:||||:.|| :||.|||  :|..:..|..:       :.|..|...|.|:|.|
 Worm   365 GDSIYLECFAYASPLPQYKWSRVDGKPIP--ARSHISNYGRV-------LKIEKVNYGDAGKYKC 420

  Fly   500 TAQNAIGKVSHSAKVNIYGLPYIREMPKITGISGSDLIVKCPVAGYPIDKIHWERDGQTLPINRR 564
            .|.||.|..:....|.:...|.|                                          
 Worm   421 VAMNAFGSAAGEVHVKLRAPPSI------------------------------------------ 443

  Fly   565 QRAYNNGTLIIEQLQRLEDAGTYTCMAQNKQKQTSRRNVEIQVLVPPKIMPIQAMTNMLREGMRA 629
                         ||.|.|                            :::|.::         ..
 Worm   444 -------------LQGLHD----------------------------RLVPTES---------NV 458

  Fly   630 AISCQILEGDLPVSFRWERNGKPLIG--TGNEVFRRLDEYSASLVIEHISSDHSGNYTCIASNVA 692
            :..|.:...|...|..|.::.||::.  ...|..:||......|.::......||.|.|:|||..
 Worm   459 SFECLLSNADSYSSVEWFKDAKPIVPLLLPAEKRKRLKIDHNVLHLKFADETDSGVYQCVASNDV 523

  Fly   693 GTERFTVPLTVNVPPKWILEPKDSS-------------AQAGADVLLHCQSSGYPTPTITWKKAI 744
            |:...:..|||          |||:             |..|:.|.:.|.....|.....|..|.
 Worm   524 GSSSSSALLTV----------KDSAPVFPPNAMSRKVFAAFGSTVSIPCIFEASPRFHGKWADAG 578

  Fly   745 G---PTPGEYKDFLYEPTVQLFPNGTIFFKKISKESQGHFLCEAKNNIGSGVSKVIFLKVNVPAH 806
            |   |..|..:|          ..|.|..:|:..|..|.|.|.|.|.:|...::|..:.||.|:.
 Worm   579 GSKLPQKGRIRD----------EEGVISIEKVLHEDAGLFFCTAHNKLGKAHAQVQLIVVNKPSI 633

  Fly   807 FQTKTKQISVAKGKQVHVQCNVQGDNP-IDFKWKI--QATQQYLDESLDSRYTIRDQVLDDGMVS 868
            ......:.:|....:|.:.|....:.| ..|:|||  :..::|  .||.|:            |.
 Worm   634 KTNFLDEETVNMSCEVELTCENSAECPEALFEWKINDRPAKEY--PSLKSK------------VH 684

  Fly   869 ELGISHTYR-----------------QDTGIYICQASNAFG---------QDEMSIQLIVQEVPE 907
            |....|..|                 :..|.:.|  |:.:|         |....|.|.|:::.|
 Worm   685 EKKSGHKGRHLKQKVDLEVPKSLAGSRQIGRFAC--SSLYGGSSEFVTKPQLPSPIALTVEQMDE 747

  Fly   908 QPKNLRINSQQSRSLQLTWSQP-----FAGNSP-IEEYHIYYK-QISDIWQNAEHLTIAGAQ-TV 964
            ..|       :.:..:|.|..|     ...:|| :|.|.:..: :.:..|:.||...:...: ..
 Worm   748 DGK-------KKKMFRLRWRLPPQHRDTRDHSPKVEGYLVELRTRKNRKWRAAERQLVGNMEKDS 805

  Fly   965 INIQQLRPAKAYHIRMSAENKLGASEFSEVVQVTTLEEVPSGPPLAVRAEPKSSTE--------- 1020
            |.::.|.|...|..|:.:.......|             ||.|...|:..|.:.:|         
 Worm   806 ITVENLLPNTEYQFRVRSVESAAIGE-------------PSIPSDWVKTAPGAPSETIDNLKWRS 857

  Fly  1021 -----IFVTWDAPE------------RDHWNGILLGYYVGYQMSLTPEDKE-------------- 1054
                 :.|.|...|            |..|:...:|......|.|:.:|.:              
 Worm   858 LDSQTLLVEWQPIEIGQESSGDNLRYRVSWSEATVGKNATDDMKLSNQDDDFENHLDSDQPQAIL 922

  Fly  1055 -VNPTQGFSFKTVEVR-------------------------------------SHF--------- 1072
             :|.|:|.....:.||                                     ||.         
 Worm   923 KLNTTEGCRMVVLAVRPVNDQGNGSVGTDTIAFLNSHGELKKVSLHNVKPINASHVNISWTWDNT 987

  Fly  1073 -----------------GGET-----------VLANLNKFTQYHVIVQAYTSQGS-GPPSKEIAV 1108
                             |.|.           :|..|...|.|...::|..:.|| ||.||:..:
 Worm   988 SDCDTKHAVQITCINLSGSEISATVASDRIFWMLGGLEAETAYDCDLKAIDNHGSFGPASKKFRI 1052

  Fly  1109 QTMEDVPSSPPESPQCDVLGSTSIYIT---WSPPDID----GQNGKIKGYKVF-YISVDELYETD 1165
            .|.:..||..|...:..:......|.|   ||..::.    .:||  .|||:| |||     ||.
 Worm  1053 HTKQHPPSETPLIGKLMMKQMKDTYTTILEWSSIELQKPNRTENG--CGYKIFIYIS-----ETA 1110

  Fly  1166 PEVVK----------STNQYVTIENLRKYTNYTVWVLAYTKVGDGMKTKP-----------FYCR 1209
            .|.::          ..|....::.|:....||:.|..|...|.|..::|           .|..
 Worm  1111 TEAIELDMPLQRLSDRRNPSARLDGLKLMYMYTIKVAGYNPGGIGPISEPRSIRLGSPGTMDYTT 1175

  Fly  1210 THEDVP 1215
            ...|||
 Worm  1176 GSSDVP 1181

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Dscam4NP_001261571.1 Ig 31..124 CDD:416386 3/12 (25%)
Ig strand A 32..35 CDD:409353
Ig strand A' 41..45 CDD:409353
Ig strand B 48..57 CDD:409353
Ig strand D 75..78 CDD:409353
Ig strand E 83..88 CDD:409353
Ig strand F 101..109 CDD:409353
Ig strand G 112..124 CDD:409353 3/11 (27%)
Ig 235..326 CDD:416386 23/93 (25%)
Ig strand A 235..238 CDD:409353 0/2 (0%)
Ig strand A' 244..248 CDD:409353 0/3 (0%)
Ig strand B 251..258 CDD:409353 2/6 (33%)
Ig strand C 266..271 CDD:409353 2/4 (50%)
Ig strand C' 276..279 CDD:409353 1/2 (50%)
Ig strand D 285..289 CDD:409353 0/3 (0%)
Ig strand E 292..298 CDD:409353 2/5 (40%)
Ig strand F 305..313 CDD:409353 1/7 (14%)
Ig strand G 316..326 CDD:409353 3/12 (25%)
IgC2_3_Dscam 329..417 CDD:409549 21/112 (19%)
Ig strand B 347..351 CDD:409549 1/3 (33%)
Ig strand C 360..364 CDD:409549 0/5 (0%)
Ig strand E 383..387 CDD:409549 1/3 (33%)
Ig strand F 397..402 CDD:409549 2/21 (10%)
Ig strand G 410..413 CDD:409549 1/2 (50%)
IgI_4_Dscam 422..516 CDD:409548 31/94 (33%)
Ig strand B 439..443 CDD:409548 1/3 (33%)
Ig strand C 452..456 CDD:409548 1/3 (33%)
Ig strand E 482..486 CDD:409548 0/3 (0%)
Ig strand F 496..501 CDD:409548 2/4 (50%)
Ig strand G 509..512 CDD:409548 0/2 (0%)
IgI_5_Dscam 520..607 CDD:409550 6/86 (7%)
Ig strand B 536..540 CDD:409550 0/3 (0%)
Ig strand C 549..553 CDD:409550 0/3 (0%)
Ig strand E 571..575 CDD:409550 0/3 (0%)
Ig strand F 586..591 CDD:409550 0/4 (0%)
Ig strand G 600..603 CDD:409550 0/2 (0%)
Ig 610..703 CDD:416386 20/94 (21%)
Ig strand A 611..613 CDD:409353 0/1 (0%)
Ig strand A' 620..624 CDD:409353 0/3 (0%)
Ig strand B 627..636 CDD:409353 1/8 (13%)
Ig strand C 641..648 CDD:409353 2/6 (33%)
Ig strand C' 650..652 CDD:409353 0/1 (0%)
Ig strand D 659..664 CDD:409353 1/4 (25%)
Ig strand E 668..675 CDD:409353 1/6 (17%)
Ig strand F 682..690 CDD:409353 4/7 (57%)
Ig strand G 693..702 CDD:409353 1/8 (13%)
IgI_7_Dscam 706..801 CDD:409546 25/110 (23%)
Ig strand B 724..728 CDD:409546 1/3 (33%)
Ig strand C 737..741 CDD:409546 0/3 (0%)
Ig strand E 766..770 CDD:409546 2/3 (67%)
Ig strand F 780..785 CDD:409546 2/4 (50%)
Ig strand G 794..797 CDD:409546 0/2 (0%)
Ig 818..904 CDD:416386 23/114 (20%)
putative Ig strand B 820..827 CDD:409353 1/6 (17%)
putative Ig strand C 835..841 CDD:409353 4/7 (57%)
putative Ig strand C' 853..856 CDD:409353 1/2 (50%)
putative Ig strand D 862..866 CDD:409353 0/3 (0%)
putative Ig strand E 868..874 CDD:409353 1/5 (20%)
putative Ig strand F 881..889 CDD:409353 2/7 (29%)
putative Ig strand G 892..902 CDD:409353 4/18 (22%)
FN3 906..999 CDD:238020 18/100 (18%)
FN3 1006..1110 CDD:238020 33/219 (15%)
fn3 1117..1203 CDD:394996 25/103 (24%)
FN3 1215..1307 CDD:238020 1/1 (100%)
Ig <1334..1401 CDD:416386
Ig strand C 1345..1349 CDD:409353
Ig strand D 1363..1366 CDD:409353
Ig strand E 1367..1372 CDD:409353
Ig strand F 1380..1388 CDD:409353
Ig strand G 1394..1401 CDD:409353
FN3 1405..1494 CDD:238020
FN3 1499..1580 CDD:238020
rig-6NP_001022014.1 Ig 153..237 CDD:299845 25/109 (23%)
Ig 240..335 CDD:299845 18/100 (18%)
Ig 358..427 CDD:299845 28/78 (36%)
IG_like 363..436 CDD:214653 27/81 (33%)
I-set 441..534 CDD:254352 26/184 (14%)
IGc2 456..524 CDD:197706 17/76 (22%)
I-set 547..627 CDD:254352 22/89 (25%)
Ig 552..627 CDD:299845 22/84 (26%)
FN3 737..839 CDD:238020 24/121 (20%)
fn3 970..1047 CDD:278470 13/76 (17%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR10075
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
33.010

Return to query results.
Submit another query.