DRSC/TRiP Functional Genomics Resources

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Protein Alignment Dscam4 and Dscaml1

DIOPT Version :10

Sequence 1:NP_001261571.1 Gene:Dscam4 / 2769008 FlyBaseID:FBgn0263219 Length:1935 Species:Drosophila melanogaster
Sequence 2:NP_001074739.2 Gene:Dscaml1 / 114873 MGIID:2150309 Length:2053 Species:Mus musculus


Alignment Length:1939 Identity:618/1939 - (31%)
Similarity:933/1939 - (48%) Gaps:208/1939 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly    34 FLHEPPHRVEFSNNSGGLIECSGHGSPPPEVEWTPIPPQQDMVFQL-------SNGSMMFYPFTA 91
            |:::....|.||::.|.::.|...|||...:.|  .....|.::.:       :||::..:||:.
Mouse    27 FVNDSLQHVTFSSSVGVVVPCPAAGSPSAALRW--YLATGDDIYDVPHIRHVHANGTLQLFPFSP 89

  Fly    92 EKYRHEVHATVYRCKLRNLVGTVLSREVHVRGVVNQKYAVQVHDEYVMTGNTAVLKCQVPSYMSE 156
            ..:...:|...|.|...|..|.:.|..:.::.|..:.|.|:|.|:..|.||.||.||.:||.:.|
Mouse    90 SAFNSFIHDNDYFCTAENAAGKIRSPNIRIKAVFREPYTVRVEDQRSMRGNVAVFKCLIPSSVQE 154

  Fly   157 FVLVTAWVQDTGMHLYPNTDIGGKYTVLSNGELYINNAGPNDAYKSYTCRTVNRLTGEVQISTYP 221
            :|.|.:|.:|| :.:.|.    .::.:.|:|.|||::....||..:|.|.|.::.:||.:.|. .
Mouse   155 YVSVVSWEKDT-VSITPE----NRFFITSHGGLYISDVQKEDALSTYRCITQHKYSGETRQSN-G 213

  Fly   222 GRIIVTEPKGMVQPRINVEKHSMRHVVLNGQTT-LPCIAQGHPVPTYRWFKEENEQLLPLQLSER 285
            .|:.||:|...: |.|....||..  |..|.:. |||.|.|:|:|..||.|:........:.::|
Mouse   214 ARLSVTDPAESI-PTILDGFHSQE--VWTGHSVELPCAASGYPIPAIRWLKDGRPLPADSRWAKR 275

  Fly   286 ITIVSAGLLKITKARLEDSGKYLCWVNNTAGEETIQVSLTVTAPLTAHLQPQVQTVDVDKDAQFQ 350
            ||    | |.|:..|.||||.|:|.|.||.|.......|||..||...|.|:.....:.......
Mouse   276 IT----G-LTISDLRTEDSGTYICEVTNTFGSAEANGILTVIDPLHVTLTPKKLKTGIGSTVILS 335

  Fly   351 CIVSGHPVHDVNWLHDGKPILRDNRVEI--LTDPPRLIIKKVQKEDPGMYQCFVSNEWEQIQSTA 413
            |.::|.|...:.|..:.:.:|....:.|  |:: ..|:|...||...|.||||.:.:.:..|..|
Mouse   336 CALTGSPEFTIRWYRNTELVLPGEAISIRGLSN-ETLLISSAQKSHSGAYQCFATRKAQTAQDFA 399

  Fly   414 ELQLGDASPELLYWFSEQTLQPGPTVSLKCVATGNPLPQFTWSLDGFPIPDSSRFLVGQYVTIHD 478
            .:.|.|.:|.::..|||:.:.||...||.|.|.|.|.|..||:||..|:.........||.....
Mouse   400 IIVLEDGTPRIVSSFSEKVVNPGEQFSLMCAAKGAPPPTVTWALDDEPVVRDGSHRTNQYTMSDG 464

  Fly   479 DVISHVNISNVKEEDGGEYTCTAQNAIGKVSHSAKVNIYGLPYIREMPKITGISGSDLIVKCPVA 543
            ..|||:|::..:..|||.|.|||:|::|...:.|::|:.|.|.||.|..||.::|.|.::.|.|.
Mouse   465 TTISHMNVTGPQIRDGGVYRCTARNSVGSAEYQARINVRGPPSIRAMRNITAVAGRDTLINCRVI 529

  Fly   544 GYPIDKIHWERDGQTLPINRRQRAYNNGTLIIEQLQRLEDAGTYTCMAQNKQKQTSRRNVEIQVL 608
            |||...|.|.:|...||.|.||..:.||||.:..:|:..|.|.|.|....:.:.:..::|.:.|.
Mouse   530 GYPYYSIKWYKDALLLPDNHRQVVFENGTLKLTDVQKGMDEGEYLCSVLIQPQLSISQSVHVAVK 594

  Fly   609 VPPKIMPIQAMTNMLREGMRAAISCQILEGDLPVSFRWERNGKPLIGTGNEVFRRLDEYSASLVI 673
            |||.|.|.:.....:  |....|.|.:..||:|:...|.::|:.:| :|:.|.....|:.:||.|
Mouse   595 VPPLIQPFEFPPASI--GQLLYIPCVVSSGDMPIRITWRKDGQVII-SGSGVTIESKEFMSSLQI 656

  Fly   674 EHISSDHSGNYTCIASNVAGTERFTVPLTVNVPPKWILEPKDSSAQAGADVLLHCQSSGYPTPTI 738
            ..:|..|:|||||||||.|.|......|.|.|||:::::|.:.....|...:|:|...|||.|.:
Mouse   657 SSVSLKHNGNYTCIASNAAATVSRERQLIVRVPPRFVVQPNNQDGIYGKAGVLNCSVDGYPPPKV 721

  Fly   739 TWKKAIGP-TPGEYKDFLYEPTVQLFPNGTIFFKKISKESQGHFLCEAKNNIGSGVSKVIFLKVN 802
            .||.|.|. .|.:|........:|:.||.::..:.:.:|..|::||:|.|.:|:.:||.:||.|.
Mouse   722 MWKHAKGSGNPQQYHPVPLTGRIQILPNSSLLIRHVLEEDIGYYLCQASNGVGTDISKAMFLTVK 786

  Fly   803 VPAHFQTKTKQISVAKGKQVHVQCNVQGDNPIDFKWKIQATQQYLDESLDSRYTIRDQVLDDGMV 867
            :||...:........||....:.|..:|:.||..:|:...|  .:|.....||.|..:...|.:|
Mouse   787 IPAMITSHPNTTIAIKGHPKELNCTARGERPIIIRWEKGDT--VIDPDRVMRYAIATKDNGDEVV 849

  Fly   868 SELGISHTYRQDTGIYICQASNAFGQDEMSIQLIVQEVPEQPKNLRINSQQSRSLQLTWSQPFAG 932
            |.|.:....|.|:..:.|.|.|::|:|...|||.|||.|:.|: |.|...::||:.|.|:|.|.|
Mouse   850 STLKLKPADRGDSVFFSCHAINSYGEDRGLIQLTVQEPPDPPE-LEIREVKARSMNLRWTQRFDG 913

  Fly   933 NSPIEEYHIYYKQISDIW---QNAEHL--TIAGAQTVINIQQLRPAKAYHIRMSAENKLGASEFS 992
            ||.|..:.|.||..||.|   |:..::  ||..|    ||..|.||..|.|||.:.||:|.||.|
Mouse   914 NSIITGFDIEYKNKSDSWDFKQSTRNISPTINQA----NIVDLHPASVYSIRMYSFNKIGRSEPS 974

  Fly   993 EVVQVTTLEEVPSGPPLAVRAEPKSSTEIFVTWDAPERDHWNGILLGYYVGYQMSLTPEDKEVNP 1057
            :.:.::|.|..|.|||:.|..:|.:|..|.|||.||:::..||::.||.:||        :|.:|
Mouse   975 KELTISTEEAAPDGPPMDVTLQPVTSQSIQVTWKAPKKELQNGVIRGYQIGY--------RENSP 1031

  Fly  1058 TQGFSFKTVEVRSHFGGET-VLANLNKFTQYHVIVQAYTSQGSGPPSKEIAVQTMEDVPSSPPES 1121
            .....:..||:::....|. .|.||.||.||.|:|||:...|:||.|.||...|:|||||.|||:
Mouse  1032 GSNGQYSIVEMKATGDSEVYTLDNLKKFAQYGVVVQAFNRAGTGPSSSEINATTLEDVPSQPPEN 1096

  Fly  1122 PQCDVLGSTSIYITWSPPDIDGQNGKIKGYKVFYISVDELYET----DPEVVKSTNQYVTIENLR 1182
            .:...:.|....|:||.|.....||.:|||:|.:.|   ||..    :.:.|.:|.:.|.:..:.
Mouse  1097 VRALSITSDVAVISWSEPPRSTLNGVLKGYRVIFWS---LYVDGEWGEMQNVTTTRERVELRGME 1158

  Fly  1183 KYTNYTVWVLAYTKVGDGMKTKPFYCRTHEDVPSAPQAIKAIPASSSKIIISWLPPDLPNGDITG 1247
            |:|||:|.|||||:.|||:::...|.:|.||||..|..|||:|:|:|.:::|||||..|||.|..
Mouse  1159 KFTNYSVQVLAYTQAGDGVRSSVLYIQTKEDVPGPPAGIKAVPSSASSVVVSWLPPTKPNGVIRK 1223

  Fly  1248 YTFYMSMLEGGR----EEGTHKRLLGPFVEMHETVRTQESATYQFWLTASTKMGEGEKTQVVTVP 1308
            ||.:.|....|:    |..|....|  |..:....|.|:   |..|:.|.|..|.|..::.||:.
Mouse  1224 YTIFCSSPGSGQPAPSEYETSPEQL--FYRIAHLNRGQQ---YLLWVAAVTSAGRGNSSEKVTIE 1283

  Fly  1309 PNNKVPARIVSFSQRIVTPWKEHLELPCRKVGAPAPVTIWRQDGHN----METSARKTIAKNGTL 1369
            |..|.||:|:||...:.|||.:.:.|||..||.|||...|.:|..:    :.....:.|..||||
Mouse  1284 PAGKAPAKIISFGGTVTTPWMKDVRLPCNSVGDPAPAVKWTKDSEDSAIPVSLDGHRLIHTNGTL 1348

  Fly  1370 YMKECQASDAGNYTCSVENTWGKDEIVYNIVVKVPPEAPNLTVINAYTDSLLLEWMDNSHGGSPI 1434
            .::..:|.|:|.|||:..||.|.|.|:.|::|:|||:.|.|||......|:.|.|:...:|||.|
Mouse  1349 LLRAVKAEDSGYYTCTATNTGGFDTIIVNLLVQVPPDQPRLTVSKTSASSITLTWIPGDNGGSSI 1413

  Fly  1435 LGYVINYKRDNG-DWEELQVDSKTTSHLLTNLWCGTRYQLYITAYNKIGTGLPCDIVNSYTKGNP 1498
            .|:|:.|..||. :|:::.:.|...|..|.:|.|||.|::.:.|.|.:|:|...:|:.:.|.|..
Mouse  1414 RGFVLQYSVDNSEEWKDVFISSSERSFKLDSLKCGTWYKVKLAAKNSVGSGRISEIIEAKTHGRE 1478

  Fly  1499 PVQPKHSQMITN-NSTSVTCWLDSWGDGGCGILYFMIESRVYGRSSWAVVSNHIPPTERIYTVSD 1562
            |...|...:.|: |||.....|..|.:|||.|...::|.|..|..:|..|..: ..||...|  :
Mouse  1479 PSFSKDQHLFTHINSTHARLNLQGWNNGGCPITAIVLEYRPKGTWAWQGVRAN-SSTEVFLT--E 1540

  Fly  1563 LVPGTKYQLKVTAHNNAGSTTAIYNFTTLSTQGVIYNNDHSTPVSHLSDLPFYAN---------- 1617
            |...|.|:|::.|.|:||.......|.||...|              |.:|...:          
Mouse  1541 LREATWYELRMRACNSAGCGNETAQFATLDYDG--------------STIPPIKSAQGEGDDVKK 1591

  Fly  1618 -FKLLLPICFSLLMLLALIGAALFLRKRKLASQARLASSSMSESPSLAN-LQNKQNRDQQYLAVR 1680
             |.:..|:      :||.:|.||....||...:.||  ..:.::.|||. |.:|.||...     
Mouse  1592 LFTIGCPV------ILATLGVALLFVVRKKRKEKRL--KRLRDAKSLAEMLISKNNRSFD----- 1643

  Fly  1681 CNPGTSAPRGSNSN-----------DSGSFGKAEGNEYIEDICPYATFQLNKQTYSESSYSGNVY 1734
             .|....|:|...:           |.      ||.:.:.|  ..||..:....:|::       
Mouse  1644 -TPVKGPPQGPRLHIDIPRVQLLIEDK------EGIKQLGD--DKATIPVTDAEFSQA------- 1692

  Fly  1735 SGPYHSVRGSFVYH--------------DVKP----------ESYHSKEPEY------TKVR--- 1766
            ..|.....|..::|              |::|          :|.||....|      ||.:   
Mouse  1693 VNPQSFCTGVSLHHPALIQSTGPLIDMSDIRPGTNPVSRKNVKSAHSTRNRYSSQWTLTKCQAST 1757

  Fly  1767 ---------RKVGRLR-------DPHSESQESDNPGSTDSEVRKILTLHIPITEYDTLGSESDND 1815
                     |.||...       |.:|.|...|    ||.....:::.....:.|:.|....::.
Mouse  1758 PARTLTSDWRTVGSQHGVTVTESDSYSASLSQD----TDKGRNSMVSTESASSTYEELARAYEHA 1818

  Fly  1816 VSARALNSAKYRAQRDTQDETSSSSETTPT-----SMTRKSKPPFAARKGGKPG 1864
            .....|..||:........::||...||.|     |||..|.|       .:||
Mouse  1819 KLEEQLQHAKFEITECFISDSSSDQMTTGTNENADSMTSMSTP-------SEPG 1865

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Dscam4NP_001261571.1 Ig 31..124 CDD:472250 21/96 (22%)
Ig strand B 50..54 CDD:409353 0/3 (0%)
Ig strand C 63..66 CDD:409353 0/2 (0%)
Ig strand E 82..86 CDD:409353 1/3 (33%)
Ig strand F 102..107 CDD:409353 2/4 (50%)
Ig strand G 115..119 CDD:409353 1/3 (33%)
Ig 235..326 CDD:472250 34/91 (37%)
Ig strand B 253..257 CDD:409353 1/4 (25%)
Ig strand C 266..270 CDD:409353 1/3 (33%)
Ig strand E 292..296 CDD:409353 2/3 (67%)
Ig strand F 306..311 CDD:409353 2/4 (50%)
Ig strand G 319..322 CDD:409353 0/2 (0%)
IgC2_3_Dscam 329..417 CDD:409549 22/89 (25%)
Ig strand A 330..335 CDD:409549 1/4 (25%)
Ig strand A' 338..342 CDD:409549 0/3 (0%)
Ig strand B 345..355 CDD:409549 1/9 (11%)
Ig strand C 360..366 CDD:409549 1/5 (20%)
Ig strand C' 367..370 CDD:409549 0/2 (0%)
Ig strand E 383..389 CDD:409549 2/5 (40%)
Ig strand F 396..404 CDD:409549 5/7 (71%)
Ig strand G 407..417 CDD:409549 2/9 (22%)
IgI_4_Dscam 422..516 CDD:409548 34/93 (37%)
Ig strand A' 430..434 CDD:409548 1/3 (33%)
Ig strand B 437..446 CDD:409548 3/8 (38%)
Ig strand C 451..457 CDD:409548 3/5 (60%)
Ig strand C' 459..462 CDD:409548 0/2 (0%)
Ig strand D 467..475 CDD:409548 2/7 (29%)
Ig strand E 479..488 CDD:409548 4/8 (50%)
Ig strand F 495..503 CDD:409548 5/7 (71%)
Ig strand G 506..516 CDD:409548 2/9 (22%)
IgI_5_Dscam 520..607 CDD:409550 31/86 (36%)
Ig strand A 520..522 CDD:409550 1/1 (100%)
Ig strand A' 527..531 CDD:409550 2/3 (67%)
Ig strand B 534..541 CDD:409550 1/6 (17%)
Ig strand C 548..554 CDD:409550 2/5 (40%)
Ig strand C' 555..557 CDD:409550 1/1 (100%)
Ig strand D 564..568 CDD:409550 2/3 (67%)
Ig strand E 571..577 CDD:409550 3/5 (60%)
Ig strand F 585..593 CDD:409550 3/7 (43%)
Ig strand G 597..607 CDD:409550 1/9 (11%)
Ig 610..703 CDD:472250 33/92 (36%)
Ig strand B 629..633 CDD:409353 1/3 (33%)
Ig strand C 643..647 CDD:409353 0/3 (0%)
Ig strand E 669..673 CDD:409353 2/3 (67%)
Ig strand F 683..688 CDD:409353 4/4 (100%)
Ig strand G 696..699 CDD:409353 0/2 (0%)
IgI_7_Dscam 706..801 CDD:409546 30/95 (32%)
Ig strand A 706..710 CDD:409546 2/3 (67%)
Ig strand A' 715..719 CDD:409546 0/3 (0%)
Ig strand B 722..731 CDD:409546 2/8 (25%)
Ig strand C 737..743 CDD:409546 2/5 (40%)
Ig strand C' 749..752 CDD:409546 0/2 (0%)
Ig strand D 760..763 CDD:409546 1/2 (50%)
Ig strand E 766..772 CDD:409546 0/5 (0%)
Ig strand F 779..787 CDD:409546 4/7 (57%)
Ig strand G 792..801 CDD:409546 4/8 (50%)
Ig 804..889 CDD:472250 22/84 (26%)
Ig strand B 822..826 CDD:409353 0/3 (0%)
Ig strand C 835..839 CDD:409353 0/3 (0%)
FN3 <850..1254 CDD:442628 165/413 (40%)
Ig strand F 882..887 CDD:409353 1/4 (25%)
FN3 906..999 CDD:238020 39/97 (40%)
fn3 1117..1203 CDD:394996 33/89 (37%)
FN3 1185..>1580 CDD:442628 151/404 (37%)
FN3 1405..1494 CDD:238020 31/89 (35%)
Dscaml1NP_001074739.2 Ig 27..122 CDD:472250 21/96 (22%)
Ig strand B 43..47 CDD:409547 0/3 (0%)
Ig strand C 56..60 CDD:409547 1/5 (20%)
Ig strand E 80..84 CDD:409547 1/3 (33%)
Ig strand F 100..105 CDD:409547 2/4 (50%)
Ig strand G 113..117 CDD:409547 1/3 (33%)
Ig 130..218 CDD:472250 32/93 (34%)
Ig strand B 142..146 CDD:409353 2/3 (67%)
Ig strand C 158..162 CDD:409353 1/3 (33%)
Ig strand E 180..184 CDD:409353 2/3 (67%)
Ig strand F 195..200 CDD:409353 2/4 (50%)
Ig strand G 211..214 CDD:409353 1/3 (33%)
I-set 233..311 CDD:400151 32/84 (38%)
Ig strand B 243..247 CDD:409353 1/3 (33%)
Ig strand C 256..260 CDD:409353 1/3 (33%)
Ig strand F 291..296 CDD:409353 2/4 (50%)
Ig_3 317..389 CDD:464046 18/72 (25%)
Ig 407..502 CDD:472250 34/94 (36%)
Ig strand B 425..429 CDD:409353 2/3 (67%)
Ig strand C 438..442 CDD:409353 1/3 (33%)
Ig strand E 468..472 CDD:409353 2/3 (67%)
Ig strand F 482..487 CDD:409353 2/4 (50%)
Ig strand G 495..498 CDD:409353 0/2 (0%)
Ig 505..593 CDD:472250 31/87 (36%)
Ig strand B 522..526 CDD:409550 0/3 (0%)
Ig strand C 535..539 CDD:409550 1/3 (33%)
Ig strand E 557..561 CDD:409550 3/3 (100%)
Ig strand F 572..577 CDD:409550 2/4 (50%)
Ig strand G 586..589 CDD:409550 0/2 (0%)
Ig 596..686 CDD:472250 33/92 (36%)
Ig strand B 613..617 CDD:409551 1/3 (33%)
Ig strand C 627..631 CDD:409551 0/3 (0%)
Ig strand E 652..656 CDD:409551 2/3 (67%)
Ig strand F 666..671 CDD:409551 4/4 (100%)
Ig strand G 679..682 CDD:409551 0/2 (0%)
Ig_DSCAM 689..785 CDD:409397 30/95 (32%)
putative Ig strand A 689..693 CDD:409397 2/3 (67%)
putative Ig strand A' 698..702 CDD:409397 0/3 (0%)
putative Ig strand B 704..714 CDD:409397 3/9 (33%)
putative Ig strand C 720..726 CDD:409397 2/5 (40%)
putative Ig strand C' 733..736 CDD:409397 0/2 (0%)
putative Ig strand D 745..748 CDD:409397 1/2 (50%)
putative Ig strand E 750..756 CDD:409397 0/5 (0%)
putative Ig strand F 763..771 CDD:409397 4/7 (57%)
putative Ig strand G 776..785 CDD:409397 4/8 (50%)
Ig_DSCAM 786..886 CDD:409398 29/101 (29%)
putative Ig strand A 786..789 CDD:409398 0/2 (0%)
putative Ig strand A' 797..801 CDD:409398 0/3 (0%)
putative Ig strand B 804..811 CDD:409398 0/6 (0%)
putative Ig strand C 819..825 CDD:409398 1/5 (20%)
putative Ig strand C' 835..838 CDD:409398 1/2 (50%)
putative Ig strand D 844..848 CDD:409398 1/3 (33%)
putative Ig strand E 850..856 CDD:409398 2/5 (40%)
putative Ig strand F 863..871 CDD:409398 2/7 (29%)
putative Ig strand G 874..884 CDD:409398 5/9 (56%)
FN3 <883..1196 CDD:442628 131/328 (40%)
fn3 <1211..1277 CDD:394996 24/70 (34%)
Ig_3 1291..1367 CDD:464046 27/75 (36%)
FN3 1384..1474 CDD:238020 31/89 (35%)
FN3 1488..1560 CDD:238020 26/74 (35%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1716..1741 5/24 (21%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1773..1803 6/33 (18%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1840..1862 10/28 (36%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1974..2053
Blue background indicates that the domain is not in the aligned region.

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