DRSC/TRiP Functional Genomics Resources

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Protein Alignment zormin and robo3

DIOPT Version :9

Sequence 1:NP_001261317.1 Gene:zormin / 2769001 FlyBaseID:FBgn0052311 Length:3664 Species:Drosophila melanogaster
Sequence 2:NP_608592.2 Gene:robo3 / 33314 FlyBaseID:FBgn0041097 Length:1342 Species:Drosophila melanogaster


Alignment Length:1367 Identity:267/1367 - (19%)
Similarity:416/1367 - (30%) Gaps:502/1367 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly  1324 RREEEERI---RRENESRSKREEEARIQREEITRLQTLRDQVDQQRIVTENIRKDIQVNSIFTEL 1385
            |||.:..|   ..:||....|...|.:|      :..|||:.   |:..:|.|            
  Fly    88 RRETDAGIYWCEAKNELGVARSRNATLQ------VAVLRDEF---RLEPQNTR------------ 131

  Fly  1386 RYASPLFTRPLKDAVSREGDRFVFECEV-TGTPEPAVEWFKDGISIQTNSDYKTTF-DKGICRLV 1448
                           ..:||..:.||.. .|.|||.|.|.|.|..:......:... |.|  .|.
  Fly   132 ---------------IAQGDTALLECAAPRGIPEPTVTWKKGGQKLDLEGSKRVRIVDGG--NLA 179

  Fly  1449 IEETFAADSARFSCRASNLVGTCDTN-ATLSVRENAAEVQLVPPRILRFLQSGKATEGSSFQFAC 1512
            |::....|..::.|.|.|.||..::: |||.|.        |.|.|:|........||:|..|.|
  Fly   180 IQDARQTDEGQYQCIAKNPVGVRESSLATLKVH--------VKPYIIRGPHDQTVLEGASVTFPC 236

  Fly  1513 VVAGVPLPTVQWFKNDKCIDDSPDYVISYNNGEATLKFEEVFLEDDAVYTCSASNPAGIEHCSAS 1577
            .|.|.|:|.|.|.:.....:...|.|....  :.:|:.|.|.:.|:..|:|.|.|..|......:
  Fly   237 RVGGDPMPDVLWLRTASGGNMPLDRVSVLE--DRSLRLERVTIADEGEYSCEADNVVGAITAMGT 299

  Fly  1578 LIVEPLEPTELPSFKVPLSNAMARVGQKIKLEAIVGGIPRPEVYW-LHNGKPFQPRDSKYEYGRV 1641
            |.|  ..|   |.|....::....:|.....|....|.|:|.::| :.|..              
  Fly   300 LTV--YAP---PKFIQRPASKSVELGADTSFECRAIGNPKPTIFWTIKNNS-------------- 345

  Fly  1642 TLIIPQAYPND--------AGSYVLSAKNLAGEAYTSCNVIVKGRLPNE----TSDSEMASDIEP 1694
            |||.|.|.|.|        .|..:|:   |.....|..::::.....||    ||..:::.|.:.
  Fly   346 TLIFPGAPPLDRFHSLNTEEGHSILT---LTRFQRTDKDLVILCNAMNEVASITSRVQLSLDSQE 407

  Fly  1695 IKPA---------VHLPLKDVSIFEGKPVRLDCVIVGQPEPEVIWYHNERPVKESADVQLLFQGD 1750
            .:|.         ..||:|.::       .|.|..:|.|.|.:.||.:..||:.|:.:.:...||
  Fly   408 DRPPPIIISGPVNQTLPIKSLA-------TLQCKAIGLPSPTISWYRDGIPVQPSSKLNITTSGD 465

  Fly  1751 RCSLIIQEV-YQEDAGHYKVVAINSAGEASSSCELKV-TPLNQAEPATRAQAERQSLPKDSQPKF 1813
               |||.:: .|:|.|.|..||.:.||:::.|..|:: .|.|......||..:.:......||| 
  Fly   466 ---LIISDLDRQQDQGLYTCVASSRAGKSTWSGFLRIELPTNPNIKFYRAPEQTKCPSAPGQPK- 526

  Fly  1814 ERLLSDVLADEGEQVVLEVQASGDQPLTAQWFLTNKELQLDQRITTQSDSELGVFKLILNNVSGD 1878
                           :|...||.   ||..|..::|         ..:.|.||            
  Fly   527 ---------------ILNATASA---LTIVWPTSDK---------AGASSFLG------------ 552

  Fly  1879 DKGVYTVKV--TNPAGDAKCFSHLIVKSVNAPENRRSSQSSVEIIERHQCPEFKELFSDKQGEID 1941
                |:|::  ||                       .|::.:.|..|...|              
  Fly   553 ----YSVEMYCTN-----------------------QSRTWIPIASRLSEP-------------- 576

  Fly  1942 EVIKFECIVKGKPTPKVHWFFNDQPVHGHNFLVSTSGERQVLTIQKLTHDAVGKISCVAENEAG- 2005
                                                    :.|::.||..|.......|||..| 
  Fly   577 ----------------------------------------IFTVESLTQGAAYMFIVRAENSLGF 601

  Fly  2006 --------KATCVAFLNIR------GSGLPASSDVQTVSQEHNTESSRVTIKKQTFTTTSTSQVN 2056
                    ..|....:.:|      |:.....|||:|:.|.::.                   |.
  Fly   602 SPPSPISEPITAGKLVGVRDGSESTGTSQLLLSDVETLLQANDV-------------------VE 647

  Fly  2057 SYEGNAPQTEVHHSSAHIDQSLKQLGQQRPEIVESHHY--QELH-----------KSKEMSSPTV 2108
            ..|.||..:.....|..||..         :.:|..:.  :|||           |.:.:||.||
  Fly   648 LLEANASDSTTARLSWDIDSG---------QYIEGFYLYARELHSSEYKMVTLLNKGQGLSSCTV 703

  Fly  2109 ----------------------------QQKSFSFIQSSGANGQSAVA----------IPDSPTR 2135
                                        :.::...:..:...|..|:.          :|..|.|
  Fly   704 PGLAKASTYEFFLVPFYKSIVGKPSNSRRMRTLEDVPEAPPYGMEAIQFNRTSVFLKWLPPQPNR 768

  Fly  2136 LRREIAPRFTTPLSGKIVDQGADVSMEAIYDGFPSPEIKVEKNGGQLFED------AHT-RISNK 2193
            .|..|...:      .:|.:|.||                 .|..::|::      |.| .::|.
  Fly   769 TRNGILTSY------NVVVKGLDV-----------------HNTTRIFKNMTIDAAAPTLLLANL 810

  Fly  2194 CNRVTIEL-----KQVGVGDAGRYAVTASNTVGQSTST-----------ADLVVKKTIFPPVFGR 2242
            ...||..:     .:||||...:.||...:...||..|           ||..:.:|.|..:.|.
  Fly   811 TTGVTYYIAVAAATRVGVGPFSKPAVLRIDARTQSLDTGYTRYPISRDIADDFLTQTWFIVLLGS 875

  Fly  2243 RLQAQVSKKGEKLTME----VEVTGLPE-------------PTVTWLKDDKPLK-----DAGISE 2285
            .:...|...|..:..:    ::.|.|..             ||:       ||.     .||.|.
  Fly   876 IIAIIVFLLGALVLFKRYQFIKQTSLGSLHGNHAIGTVRKFPTL-------PLNGGGAVGAGGSN 933

  Fly  2286 HRLLAQGNSYRLIIEKAQTTDSGKYMVRATNAGGEAKSIADCAILEPSPERLQEVVK-----TIV 2345
            ....|..:.:.|.|:..    ||.:  |....||....:..|...|..|...|...:     |::
  Fly   934 STAAAGQSGHGLWIDPT----SGVW--RQAAGGGNPGGVGSCTTKEQLPGYAQATAQQGQQPTLL 992

  Fly  2346 YETGPVAP----------ASEFKTEV------------------------------------QKQ 2364
            .:...::|          .|.||:..                                    |.:
  Fly   993 PDYERLSPLNMPDYAEVACSTFKSPTHGAPPMGGGGGGQSASLYDSCGAYATTNVVANVKLYQNR 1057

  Fly  2365 IQNSENQQSYQNSQTEVTSANDLH--GLSESKVITEHRCTTEATMRLEHKSNYLDLPELTTR--P 2425
            .....||.|..|:...  ..||..  |:..:.....:.|......:.:.:.|.:.....:|.  .
  Fly  1058 YATKPNQSSGSNNNNH--QGNDYQSTGMYSAPPSAHYGCLEPKQQQQQQQPNLMTTSTASTAILT 1120

  Fly  2426 KTPTTNDTITITTNTATVSMDQ----PDLTQPTITNTTTTNTTKVPPPVPPKPCTPVVATTFGQQ 2486
            .:|.....|.||.|    .|||    .:.|.|                             |.||
  Fly  1121 NSPAKVKKINITEN----KMDQLEGKSERTNP-----------------------------FNQQ 1152

  Fly  2487 QQ 2488
            ||
  Fly  1153 QQ 1154

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
zorminNP_001261317.1 SPEC 126..332 CDD:238103
SPEC <504..641 CDD:295325
COG1340 960..1298 CDD:224259
RILP-like <1190..1315 CDD:304877
MAP7 1233..1365 CDD:283355 12/43 (28%)
I-set 1390..1479 CDD:254352 25/91 (27%)
IGc2 1403..1469 CDD:197706 20/67 (30%)
I-set 1491..1580 CDD:254352 26/88 (30%)
IGc2 1504..1570 CDD:197706 21/65 (32%)
I-set 1589..1675 CDD:254352 20/94 (21%)
Ig 1605..1675 CDD:299845 17/78 (22%)
I-set 1702..1786 CDD:254352 27/84 (32%)
Ig 1713..1786 CDD:299845 25/73 (34%)
I-set 1811..1902 CDD:254352 16/92 (17%)
Ig 1828..1892 CDD:143165 14/65 (22%)
I-set 1927..2015 CDD:254352 10/96 (10%)
IGc2 1940..2005 CDD:197706 7/64 (11%)
I-set 2142..2231 CDD:254352 22/111 (20%)
Ig 2158..2231 CDD:299845 20/95 (21%)
I-set 2238..2325 CDD:254352 20/108 (19%)
Ig 2254..2324 CDD:299845 17/91 (19%)
I-set 3566..3655 CDD:254352
Ig 3583..3650 CDD:143165
robo3NP_608592.2 Ig 22..117 CDD:299845 9/34 (26%)
I-set 23..116 CDD:254352 9/33 (27%)
I-set 122..211 CDD:254352 28/120 (23%)
Ig 125..211 CDD:299845 27/114 (24%)
I-set 215..302 CDD:254352 26/88 (30%)
Ig 232..302 CDD:299845 20/71 (28%)
I-set 306..401 CDD:254352 24/111 (22%)
Ig 320..411 CDD:299845 23/107 (21%)
I-set 412..492 CDD:254352 26/89 (29%)
IGc2 429..489 CDD:197706 21/69 (30%)
FN3 519..612 CDD:238020 29/213 (14%)
FN3 644..735 CDD:238020 16/118 (14%)
fn3 743..832 CDD:278470 22/111 (20%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.910

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