DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Trl and bab2

DIOPT Version :9

Sequence 1:NP_001261846.1 Gene:Trl / 2768981 FlyBaseID:FBgn0013263 Length:623 Species:Drosophila melanogaster
Sequence 2:NP_523879.2 Gene:bab2 / 44254 FlyBaseID:FBgn0025525 Length:1067 Species:Drosophila melanogaster


Alignment Length:758 Identity:164/758 - (21%)
Similarity:257/758 - (33%) Gaps:280/758 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 YSLTWGDYGTSLVSAIQLLRCHGDLVDCTLAAGGRSFPAHKIVLCAASPFLLDLLKNTPCKHPVV 73
            :.|.|.:|.::|.:....|......||.||:..|.|..|||:||.|.||:...|..:.||:||::
  Fly   198 FCLRWNNYQSNLTNVFDELLQSESFVDVTLSCEGHSIKAHKMVLSACSPYFQALFYDNPCQHPII 262

  Fly    74 MLAGVNANDLEALLEFVYRGEVSVDHAQLPSLLQAAQCLNIQGLAPQTVTKDDYTTHSIQLQHMI 138
            ::..|:.:||:||:||:|:||::|...|:..||:.|:.|.|:|||..:..:.:....::.:... 
  Fly   263 IMRDVSWSDLKALVEFMYKGEINVCQDQINPLLKVAETLKIRGLAEVSAGRGEGGASALPMSAF- 326

  Fly   139 PQHHDQDQLIATIATAPQQTVHAQVVEDIHHQGQILQATTQTNAAGQQQTIVTTDAAKHDQAVIQ 203
             ...|:::.:|:.....||...|...|::                          .||..:.:.:
  Fly   327 -DDEDEEEELASATAILQQDGDADPDEEM--------------------------KAKRPRLLPE 364

  Fly   204 AFLPARKRKPRVKKMSPTAPKISKVEGMDTIMGTPTSSHGSGSVQQVLGENGAEGQLLSSTPIIK 268
            ..|...:|:   :|.|           .|....||:.|...|  :..:.|.|:.|     ||   
  Fly   365 GVLDLNQRQ---RKRS-----------RDGSYATPSPSLQGG--ESEISERGSSG-----TP--- 405

  Fly   269 SEGQKVETIVTMDPNNMI--PVTSANAATGE-------------ITPAQGATGSSGGNTSGVLST 318
              ||.....:.|..:.::  |..|.|..|.|             .:||..|||.|.||:...:.:
  Fly   406 --GQSQSQPLAMTTSTIVRNPFASPNPQTLEGRNSAMNAVANQRKSPAPTATGHSNGNSGAAMHS 468

  Fly   319 PKAKRAKHPPGTEKPRSRSQSEQPATCPICYAVI--------RQSRNLRRHLELRHFAKPGVKKE 375
                    |||       ..:.|.|..|...|::        ..::.|....:|.|         
  Fly   469 --------PPG-------GVAVQSALPPHMAAIVPPPPSAMHHHAQQLAAQHQLAH--------- 509

  Fly   376 KKSKSGNDTTLDSSMEMNTTAEGDNTVGSDGAGGAGSAGGQSSATSGKKSSSGSSGSGSGALSSS 440
                        |....:..|......|:.|||||||  |..|..|.....:|.:|||:||    
  Fly   510 ------------SHAMASALAAAAAGAGAAGAGGAGS--GSGSGASAPTGGTGVAGSGAGA---- 556

  Fly   441 GSVPQVQTVQSLHTLQGVQVKKDPDAQQQQQQQQQQQQQQQQQAMTVSGATGG------------ 493
                   .|.|.|           |..:.:.:..:..:::::..|..||..||            
  Fly   557 -------AVGSHH-----------DDMEIKPEIAEMIREEERAKMIESGGHGGWMGAAAAATGAA 603

  Fly   494 -----QVQQQVQQVQQQVQQQQQQQQQQQ------------------------------------ 517
                 ..|.|:|.:.|:.....||...||                                    
  Fly   604 SVAADSYQYQLQSMWQKCWNTNQQNLVQQLRFRERGPLKSWRPEAMAEAIFSVLKEGLSLSQAAR 668

  Fly   518 ----------------------------------------------------------------- 517
                                                                             
  Fly   669 KFDIPYPTFVLYANRVHNMLGPSLDGGADPRPKARGRPQRILLGMWPEELIRSVIKAVVFRDYRE 733

  Fly   518 --QQLQHHQIIDSSGNIT-----TATTSAQAAAAAQQQAAGQQQQLVAQSDGSESGAPLSIAQVQ 575
              :.:..||..:..|:.|     |.|....:||||:..|   |...:|..|   :|:||| :..:
  Fly   734 IKEDMSAHQYANGQGHGTYIGGGTTTNGYHSAAAAKLAA---QNAALAPPD---AGSPLS-SMTE 791

  Fly   576 TLQGHQIIGNLNQVNITDFQQQQPQQQQQQQQQQQQQQQQQQQ 618
            ||: .||:.          ||||.||..|||...|||....||
  Fly   792 TLR-RQILS----------QQQQHQQHHQQQAHHQQQPSHHQQ 823

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
TrlNP_001261846.1 BTB 27..117 CDD:279045 37/89 (42%)
BTB 35..118 CDD:197585 36/82 (44%)
GAGA 319..372 CDD:150045 10/60 (17%)
bab2NP_523879.2 BTB 213..309 CDD:279045 40/95 (42%)
BTB 224..309 CDD:197585 38/84 (45%)
HTH_psq 645..690 CDD:283007 0/44 (0%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 59 1.000 Domainoid score I10615
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 80 1.000 Inparanoid score I5230
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000141
OrthoInspector 1 1.000 - - otm40394
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR23110
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
66.060

Return to query results.
Submit another query.