DRSC/TRiP Functional Genomics Resources

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Protein Alignment Trl and lov

DIOPT Version :10

Sequence 1:NP_001261846.1 Gene:Trl / 2768981 FlyBaseID:FBgn0013263 Length:623 Species:Drosophila melanogaster
Sequence 2:NP_611994.3 Gene:lov / 38007 FlyBaseID:FBgn0266129 Length:1143 Species:Drosophila melanogaster


Alignment Length:611 Identity:120/611 - (19%)
Similarity:192/611 - (31%) Gaps:222/611 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 YSLTWGDYGTSLVSAIQLLRCHGDLVDCTLAAGGRSFPAHKIVLCAASPFLLDLLKNTPCKHPVV 73
            |||.|.::...::.|...|.....|||.||.....|..|||:||.|.|||...:...|||||||:
  Fly   115 YSLRWNNHQNHILRAFDALLKTKTLVDVTLVCAETSIRAHKMVLSACSPFFQRVFAETPCKHPVI 179

  Fly    74 MLAGVNANDLEALLEFVYRGEVSVDHAQLPSLLQAAQCLNIQGLAPQTV---------TKDDY-- 127
            :|.......::|:::|:||||:||...:|.:|:||.:.|.::||...:|         :.||:  
  Fly   180 VLKDFRGWVVQAIVDFMYRGEISVPQQRLQTLIQAGESLQVRGLVESSVPEHTPTPAASPDDFGM 244

  Fly   128 ---------------------------------------TTHSIQLQHMIPQHHDQD-------- 145
                                                   ...::.|:....|..|:|        
  Fly   245 LDTSMLSSTFEDECPTMVRPSKGGKLLMPSARLFGNASSAIAALGLRRKREQESDRDLESDQELG 309

  Fly   146 ------------------------QLIATIATAPQQTVHAQVVEDIHHQGQILQATTQTNAAGQQ 186
                                    .|..|.|.:.|..:..:::|......:  :|..|.|:.|:.
  Fly   310 GSSPMPRRKQARPRRRSGDVPHDFTLNKTDAESLQTVIKHELLERAERDQE--EAPDQDNSQGEA 372

  Fly   187 QTIVTTDAAKHDQAVIQAFLPARKRKPRVKKMSPTAPKISKVEGMDTIMGTPTSSHGSGSVQQVL 251
            :.|.::              ||:....|.|:.     |..|.||.|.......:.|     |..|
  Fly   373 EKISSS--------------PAKTLVERAKEQ-----KSMKEEGSDQPRSLNENHH-----QLEL 413

  Fly   252 GENGAEGQLLSSTPIIKSEGQKVETIV------------------TMDPN--------------- 283
            .:...:.|     ...:.|.|.:|.::                  .|.||               
  Fly   414 DDEDDDDQ-----DHEEEEEQDIEELIHTTNELRRQAAAAAANAAAMSPNPSPCLSDGPEDLCTT 473

  Fly   284 ----NMI--PVTSANA----------------------------ATGEITPAQGATGSSGGNTSG 314
                .:|  |.:||:.                            |....|.....|..|||| :|
  Fly   474 KKGKELISGPSSSADCESNNNNSSKLQDNNQRIMLSLKDIRQLNANPNPTAIHTPTSCSGGN-NG 537

  Fly   315 VLSTPKAKRAKHPPGTEKP---------RSRSQSEQPATCPICYAVIRQSRNLRRHLE------L 364
            :|:.|       |||...|         ....:::..|......|......:...|:|      |
  Fly   538 LLTFP-------PPGLRPPGLPDSPPCHMEALEAQMHAAAAAAVAAAGSGEHPFHHMEHQMEMSL 595

  Fly   365 RHFAKPGVKKEKKSKSGNDTTLDSSMEMNTTAEGDNTVGSDGAGGAGSAGGQSSATSGKKSSSGS 429
            ...|......:::.:...|     ..:.|..|  .|.:|..|....|...|         ...|:
  Fly   596 AAAAAAAAMHQREPRDPRD-----GRDHNAFA--SNLLGPMGMPPFGGHNG---------GHPGN 644

  Fly   430 SGSGSGALSSSGSVPQVQTVQSLHTL 455
            ||.|:|.   .|.....:..:|::.|
  Fly   645 SGPGNGC---PGQAAHERLEESMNRL 667

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
TrlNP_001261846.1 BTB_POZ_BAB-like 33..116 CDD:349624 36/82 (44%)
GAGA 319..372 CDD:462719 11/67 (16%)
lovNP_611994.3 BTB_POZ_BAB-like 139..222 CDD:349624 36/82 (44%)
HTH_psq 791..834 CDD:283007
Blue background indicates that the domain is not in the aligned region.

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