DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Trl and psq

DIOPT Version :10

Sequence 1:NP_001261846.1 Gene:Trl / 2768981 FlyBaseID:FBgn0013263 Length:623 Species:Drosophila melanogaster
Sequence 2:NP_001369078.1 Gene:psq / 36118 FlyBaseID:FBgn0263102 Length:1170 Species:Drosophila melanogaster


Alignment Length:695 Identity:181/695 - (26%)
Similarity:255/695 - (36%) Gaps:193/695 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 YSLTWGDYGTSLVSAIQLLRCHGDLVDCTLAAGGRSFPAHKIVLCAASPFLLDLLKNTPCKHPVV 73
            :||.|.:|..::.|..|.||.....||.||:....|..|||:||.|.|.:...||...|||||.:
  Fly    10 FSLRWNNYQNTMTSVFQQLREDLSFVDVTLSCEHGSLKAHKVVLSACSTYFQKLLLENPCKHPTI 74

  Fly    74 ML-AGVNANDLEALLEFVYRGEVSVDHAQLPSLLQAAQCLNIQGLAPQTVTKDDYT-------TH 130
            :| |.:...||:.:::||||||:.|..::|..||:.|:.|.|:||.......||..       |.
  Fly    75 ILPADIIFTDLKTIIDFVYRGEIDVTESELQGLLRTAEQLKIKGLCETAENADDLNDAATATITV 139

  Fly   131 SIQLQH----------MIP-----------QHHDQDQLIATIATAPQQTVHAQVVEDIHHQ---- 170
            |..:|.          ::|           |||.|.|.........||.||||..:....|    
  Fly   140 SENIQQAVVGNIVNAAIVPGAPSPSLEQQQQHHQQQQQQQAQEQHQQQQVHAQQQQQQQQQINAA 204

  Fly   171 ---------------GQILQATTQTNA---AGQQQTIVTTDAAKHDQAVIQAFLPARKRKPRVKK 217
                           ||:|.::...::   ||.||...|...           |....||.|:|:
  Fly   205 LLTQHGVSSGSVSLSGQLLSSSASGSSGSLAGGQQASQTPSG-----------LQPTPRKSRLKR 258

  Fly   218 MSPTAPKISKVEGMDTIMGTPTSSHGSGSVQQVLGENGAEGQLLSSTP-------IIKSEGQKVE 275
            ..  :|.:|...|..:..|:     .|||.||            ...|       .|..:||...
  Fly   259 SK--SPDLSSGGGAGSSGGS-----SSGSTQQ------------QPQPAHHHHPQTILIQGQNPN 304

  Fly   276 TIVTMD---PNNMIPVT----SANAATGEITPAQGATGSSGGNTSGVLSTPKAK---RAKHPPG- 329
            :||::.   ..|.|||:    .::|...|.....|.....||:|.|...:.:..   ..:|.|. 
  Fly   305 SIVSLQQTADGNYIPVSGSGDDSDAEDHEHEHNHGHGHGHGGHTHGHGHSHEHSHDHEHEHKPNK 369

  Fly   330 ---TE----KPRSRSQSEQPATCPIC------YAVIRQSRNLRRHLELRHFAKPGV--------- 372
               ||    .|.|.|.|.......:.      .|::.|....|...:.::....|:         
  Fly   370 ICKTEHSVASPASNSSSASNNAAGVSGVTSTGQAIVTQIVVARDGKDTKNMTSLGMGMNGGLLGV 434

  Fly   373 -------KKEKKSKSGNDTTLDSSMEM------------NTT--AEGDNTVGSDGAGGAGSAGGQ 416
                   ..|..:.|....|:...:::            |||  .:.||.:            .|
  Fly   435 PMGFLDFTPEPPAPSATPVTVTEHVDLSCNPSTDTRDLSNTTEPLDIDNHL------------AQ 487

  Fly   417 SSATSGKKSSSGSSGSGSGALSSSGSVPQV--QTVQSLHTL-------QGVQVKKDPDAQQQQQQ 472
            ......:......|...:|..|:|..|..:  :.:::.|..       |..|......|.||.||
  Fly   488 QIHRLDQSPMHSISHHHTGDESNSNLVQHIKSEVIEAKHLAAQHHALSQAQQQHAHHQAHQQHQQ 552

  Fly   473 QQQQQQQQQQQAMTVSGATGGQVQQQVQQVQQQVQQQQQQQQQQQQQLQHHQIIDSSGNITTATT 537
            .||||.|||||.:            ..||:..|.|.||||||||||| ||||           ..
  Fly   553 HQQQQHQQQQQHL------------HAQQLLAQSQLQQQQQQQQQQQ-QHHQ-----------QQ 593

  Fly   538 SAQAAAAAQQQAAGQQQQLVAQSDGSESGAPLSIAQVQTLQGHQI 582
            ..||||||  .|||    :..|..|..:.|.:..|.|..:...||
  Fly   594 QQQAAAAA--AAAG----VHGQHGGHVTHADIGGATVMEIDPSQI 632

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
TrlNP_001261846.1 BTB_POZ_BAB-like 33..116 CDD:349624 36/83 (43%)
GAGA 319..372 CDD:462719 11/69 (16%)
psqNP_001369078.1 BTB_POZ_BAB-like 34..118 CDD:349624 36/83 (43%)
HTH_psq 717..>747 CDD:283007
HTH_psq 767..804 CDD:283007
HTH_psq 821..866 CDD:283007
HTH_psq 873..916 CDD:283007
Blue background indicates that the domain is not in the aligned region.

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