DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Trl and CG8924

DIOPT Version :9

Sequence 1:NP_001261846.1 Gene:Trl / 2768981 FlyBaseID:FBgn0013263 Length:623 Species:Drosophila melanogaster
Sequence 2:NP_573091.1 Gene:CG8924 / 32557 FlyBaseID:FBgn0030710 Length:514 Species:Drosophila melanogaster


Alignment Length:512 Identity:114/512 - (22%)
Similarity:182/512 - (35%) Gaps:151/512 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 YSLTWGDYGTSLVSAIQLLRCHGDLVDCTLAAGGRSFPAHKIVLCAASPFLLDLLKNTPCKHPVV 73
            :.:.|..:..|:.:|...|......||.|||..|:....|::||.|.|.:...:|...||||||:
  Fly     8 FCVRWNSHLGSIGAAFPQLLAGQRFVDVTLACEGQQVHCHRLVLAACSTYFEAILAEHPCKHPVI 72

  Fly    74 ML-AGVNANDLEALLEFVYRGEVSVDHAQLPSLLQAAQCLNIQGL----APQTVTK--------- 124
            :| ..:...:::||::|:|:|||:|..|.|..||:.|:.|.|:||    ||....|         
  Fly    73 ILPREIKLWEIQALVDFMYKGEVNVTQAGLGQLLRCAEQLQIRGLYGSEAPINYKKLQQASLEAA 137

  Fly   125 -------------------DDYTTHSIQLQHM-------IPQHHDQDQLIATIATAPQQTVHAQV 163
                               ||..|:|.....|       :|.:|.|..::.......:|....|.
  Fly   138 KDPAATTARSFKHVDSAETDDAATNSTTSTTMTTSSAPPLPVNHQQPTVLKRQNPDARQQQQQQQ 202

  Fly   164 VEDIHHQGQI-------LQATTQTNAAGQQQTIVTTDAAKHD-------------------QAV- 201
            .:.:..:.||       ....|.||..|......|.|.:..:                   ||| 
  Fly   203 QQQVQQRPQINGSNAQQPSKATSTNVLGSHSNAPTEDDSGDEVPNNWNAYGEQFDDCNISAQAVD 267

  Fly   202 ----IQAFLPARKRKPRVKKMS----------------------------PTAPKISKVEGMDTI 234
                :...|...:.:.::::..                            |....:|.  .:||.
  Fly   268 NKMNVHLSLQQARMQMQLQQQQYLDSNVEDDHNYVAAHDENNDSSFATGVPCGSGLSL--SLDTD 330

  Fly   235 MGTPTSSHGSGSVQQVLGENG------AEGQLLSSTPIIKSEGQKVETIVTMDPNNM--IPVTSA 291
            :.|..::.|..|...:.|...      :|..|..:...: |:|:..:|:     :||  |||::.
  Fly   331 LDTSANTSGGLSHSSIDGYTSYKRVRRSEASLAQAAKCV-SKGETFQTV-----SNMFNIPVSTI 389

  Fly   292 N--AATGEITP--AQGATGSSGGN-----TSGVLSTPKAKRAKHPPG----TEKPRSRSQSEQPA 343
            .  .|...|.|  .:|...|..||     .||.|||..|. ..|||.    ...|...:||:|.:
  Fly   390 RFYMARKGILPKRKRGRGASHAGNIIITTNSGKLSTVPAS-ITHPPAHPHIHTNPLPHTQSQQMS 453

  Fly   344 TCPICYAVIRQSRNLRRHLELRHFAKPGVKKEKKSKS---GNDTTLDSSMEMNTTAE 397
            ...:             ||      |.|:.....|.|   ...|::..|.:|.||.:
  Fly   454 MDSL-------------HL------KAGIANTSGSNSPATATATSMSPSFDMATTGD 491

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
TrlNP_001261846.1 BTB 27..117 CDD:279045 35/90 (39%)
BTB 35..118 CDD:197585 35/87 (40%)
GAGA 319..372 CDD:150045 11/56 (20%)
CG8924NP_573091.1 BTB 25..117 CDD:279045 35/91 (38%)
BTB 34..117 CDD:197585 33/82 (40%)
MerR 378..407 CDD:278788 9/33 (27%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 59 1.000 Domainoid score I10615
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000141
OrthoInspector 1 1.000 - - otm40394
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR23110
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
55.010

Return to query results.
Submit another query.