DRSC/TRiP Functional Genomics Resources

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Protein Alignment Trl and mamo

DIOPT Version :9

Sequence 1:NP_001261846.1 Gene:Trl / 2768981 FlyBaseID:FBgn0013263 Length:623 Species:Drosophila melanogaster
Sequence 2:NP_572932.2 Gene:mamo / 32353 FlyBaseID:FBgn0267033 Length:1553 Species:Drosophila melanogaster


Alignment Length:715 Identity:158/715 - (22%)
Similarity:224/715 - (31%) Gaps:224/715 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 YSLTWGDYGTSLVSAIQLLRCHGDLVDCTLAAG-GRSFPAHKIVLCAASPFLLDLLKNTPCKHPV 72
            |.|.|.:|.::|:.....|...|.|||.||... |.|..|||:||.|.|.:...|....|..|.:
  Fly     6 YCLRWNNYQSNLLGVFSQLLQDGSLVDVTLVCSEGTSIRAHKVVLSACSSYFQSLFLEHPEGHLI 70

  Fly    73 VMLAGVNANDLEALLEFVYRGEVSVDHAQLPSLLQAAQCLNIQGLAPQTVTKDDYTTHSIQLQHM 137
            |:|..|...:|:.|:||:|:|||:|.:.||.:||:.|:.|.::|||..|...........:...:
  Fly    71 VILKDVRFAELQTLVEFMYKGEVNVQYCQLSALLKTAESLKVKGLAEMTNQNTTLREPEREPDRL 135

  Fly   138 IPQ---------HHDQDQLIATI-ATAPQQTVHAQVVEDIHHQGQILQATTQTNAAGQQQTIVTT 192
            .||         |...|...|.: |||..|...|             .||....||....|..|:
  Fly   136 RPQGGGGSGGSAHKAADSPAAALDATAATQAATA-------------TATATAAAATSTSTSATS 187

  Fly   193 DAAKHDQAVIQAFLPARKRKPRVKKMSPTAPKISKVEGMDTIMGTPTSSHGSGSVQQVLGENGAE 257
            .||                         ||...:......    |.|::.||.:....       
  Fly   188 AAA-------------------------TAAATAATSAST----TATAAAGSSNTTTT------- 216

  Fly   258 GQLLSSTPIIKSEGQKVETIVTMDPNNMIPVTSANAATGEITPAQGATGSSGGNTSGVLSTPKAK 322
               .::|...........|..|...::   ||||.||......|.|...|... ||...||...|
  Fly   217 ---TAATTTATCATAATSTAATSSSSS---VTSAAAAAAAAASASGVAHSEEA-TSSSSSTGGQK 274

  Fly   323 RAKHPPGTEKPRSRSQSEQPATCPICYAVIRQ---------------SRNLRRH----------- 361
            |......:..|..||....||. .:..|..|:               .|||:..           
  Fly   275 REASDRSSPTPAKRSSRMHPAD-KVDVAEDREQEQNQADELLSEELLGRNLKDEEDDDVDELDEN 338

  Fly   362 ----------------------LELRHFAKPGVKKEKKS-------KSGNDTTLDSSMEMNTTAE 397
                                  :.|..:.:|.|  |.||       :.|...:|..|.....|..
  Fly   339 EETKLRGRDEDDDDEDEEEDTPMPLDLYQRPNV--EPKSAAAATAAQQGGSNSLSGSSNACHTNS 401

  Fly   398 GDNTVGSDGAGGAGSAGGQSSATSGKKSSSGSSGSGSGALSSSGSVPQVQTVQSLHTLQGVQVKK 462
            ..|:..::......|:...::.:|||.|:|    |..|..||.|:...|..|.        ....
  Fly   402 SSNSNNNNNNNNNSSSNNNNNTSSGKTSAS----SNGGTASSGGTADSVVAVD--------DDDD 454

  Fly   463 DPDAQQQQQQQQQQQQQQQ--------QQAMTVSGATG---GQVQQQVQQVQQQVQQ-----QQQ 511
            |.|.....|:|....:.:|        ...:.|..||.   |..|:...|..|::..     |.|
  Fly   455 DDDGGHHHQRQVMDDRLEQDVDEEDLDDDVVVVGPATAMARGIAQRLAHQNLQRLHHTHHHAQHQ 519

  Fly   512 QQQQQQQQLQHH------------------------QIID------------------------- 527
            ..|......|||                        :|:|                         
  Fly   520 HSQHHHPHSQHHHTPHHQQHHTHSDDEDAMPVIAKSEILDDDYDDEMDLEDDDEADNSSNDLGLN 584

  Fly   528 ----------------SSGN------ITTATTSAQAAAAAQQQAAGQQQQLVAQSDGSESGAPLS 570
                            |:|:      :.|..:|:.|||||...|...|:...|.|....:||..|
  Fly   585 MKMGSGGAGGGGGVDLSTGSTLIPSPLITLPSSSAAAAAAAAAAMESQRSTPAMSAAQAAGAGAS 649

  Fly   571  570
              Fly   650  649

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
TrlNP_001261846.1 BTB 27..117 CDD:279045 37/90 (41%)
BTB 35..118 CDD:197585 34/83 (41%)
GAGA 319..372 CDD:150045 14/100 (14%)
mamoNP_572932.2 BTB 21..118 CDD:279045 40/96 (42%)
BTB 32..118 CDD:197585 36/85 (42%)
C2H2 Zn finger 1082..1105 CDD:275368
C2H2 Zn finger 1116..1137 CDD:275368
C2H2 Zn finger 1149..1169 CDD:275368
zf-C2H2 1469..1491 CDD:278523
C2H2 Zn finger 1471..1491 CDD:275368
zf-H2C2_2 1483..1506 CDD:290200
C2H2 Zn finger 1499..1519 CDD:275368
zf-H2C2_2 1511..1536 CDD:290200
C2H2 Zn finger 1527..1547 CDD:275368
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 59 1.000 Domainoid score I10615
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000141
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR23110
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
44.010

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