DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Trl and CG12236

DIOPT Version :9

Sequence 1:NP_001261846.1 Gene:Trl / 2768981 FlyBaseID:FBgn0013263 Length:623 Species:Drosophila melanogaster
Sequence 2:NP_727050.1 Gene:CG12236 / 31523 FlyBaseID:FBgn0029822 Length:553 Species:Drosophila melanogaster


Alignment Length:557 Identity:112/557 - (20%)
Similarity:166/557 - (29%) Gaps:270/557 - (48%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 YSLTWGDYGTSLVSAIQLLRCHGDLVDCTLAAGGRSFPAHKIVLCAASPFLLDLLKNTPCKHPVV 73
            |||.|.:|...|..::...|.:.|.||.:|...||...|||:||.:.|.:..::.|..|..|||:
  Fly     7 YSLRWNNYLRHLTYSLDNHRLNDDFVDVSLCVDGRRIKAHKVVLSSCSSYFKEIFKENPHPHPVI 71

  Fly    74 MLAGVNANDLEALLEFVYRGEVSVDHAQLPSLLQAAQCLNIQGLAPQTVTKDDYTTHSIQLQHMI 138
            :...:...||.:::||:|:|||:|....|.|.||.|:.|.:|||..:                  
  Fly    72 IFKFIKFEDLNSIIEFMYQGEVNVQQEALQSFLQTAELLAVQGLTAE------------------ 118

  Fly   139 PQHHDQDQLIATIATAPQQTVHAQVVEDIHHQGQILQATTQTNAAGQQQTIVTTDAAKHDQAVIQ 203
                                                                             
  Fly   119 ----------------------------------------------------------------- 118

  Fly   204 AFLPARKRKPRVKKMSPTAPKISKVEGMDTIMGTPTSSHGSGSVQQVLGENGAEGQLLSSTPIIK 268
                 .|.||::    |.||.||:.:.:.||   |::.......||.: .|.|:.|..:.|    
  Fly   119 -----EKEKPQI----PVAPLISEHKLIKTI---PSTIRAVNEQQQQV-SNVAQAQTATQT---- 166

  Fly   269 SEGQKVETIVTMDPNNMIPVTSANAATGEITPAQGATGSSGGNTSGVLSTPKAKRAKHPPGTEKP 333
                     :.:....::..|:|:....::..|..|                             
  Fly   167 ---------IEIPAATLLQATNASQVPSQVVAAAAA----------------------------- 193

  Fly   334 RSRSQSEQPATCPICYAVIRQSRNLRRHLELRHFAKPGVKKEKKSKSGNDTTLDSSMEMNTTAEG 398
                            |...|...::...:..|                                
  Fly   194 ----------------AAAAQQLQVQHQQQQHH-------------------------------- 210

  Fly   399 DNTVGSDGAGGAGSAGGQSSATSGKKSSSGSSGSGSGALSSSGSVPQVQTVQSLHTLQGVQVKKD 463
                                                          .|||.|    :|.:||:..
  Fly   211 ----------------------------------------------HVQTTQ----IQHIQVQSA 225

  Fly   464 PDAQQQQQQQQQQQQQQQQQAMTVSGATGGQVQQQVQQVQQQVQQQQQQQQQQQQQLQHHQIIDS 528
            |..|||||||||||||||||                   |||.|||.||||....|.||..|   
  Fly   226 PPPQQQQQQQQQQQQQQQQQ-------------------QQQQQQQSQQQQTTPVQTQHLTI--- 268

  Fly   529 SGNITTATTSAQAAAAAQQQAAGQQQQLVAQSDGSES 565
                    |:|.|..|    |:..:::.:..||..::
  Fly   269 --------TNAVALPA----ASSVKKRKITFSDDDDN 293

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
TrlNP_001261846.1 BTB 27..117 CDD:279045 34/89 (38%)
BTB 35..118 CDD:197585 32/82 (39%)
GAGA 319..372 CDD:150045 3/52 (6%)
CG12236NP_727050.1 BTB 22..116 CDD:279045 35/93 (38%)
BTB 33..116 CDD:197585 32/82 (39%)
Herpes_capsid <376..467 CDD:283714
C2H2 Zn finger 483..512 CDD:275371
C2H2 Zn finger 514..535 CDD:275371
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 69 1.000 Domainoid score I9606
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000141
OrthoInspector 1 1.000 - - otm40394
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR23110
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
55.010

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