DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Trl and Zbtb43

DIOPT Version :9

Sequence 1:NP_001261846.1 Gene:Trl / 2768981 FlyBaseID:FBgn0013263 Length:623 Species:Drosophila melanogaster
Sequence 2:NP_001012094.1 Gene:Zbtb43 / 311872 RGDID:1310287 Length:503 Species:Rattus norvegicus


Alignment Length:516 Identity:92/516 - (17%)
Similarity:168/516 - (32%) Gaps:188/516 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 PMNSLYSLTWGDYGTSLVSAIQLLRCHGDLVDCTLAAGGRSFPAHKIVLCAASPFLLD--LLKNT 66
            |..:.:.:.:.|:.::::..:...|..|.|.|.::...|..|.|||.||.|:||:..|  ||||:
  Rat    39 PGTNSFQVEFPDFSSTILQKLNQQRQQGQLCDVSIVVQGHIFQAHKAVLAASSPYFCDQVLLKNS 103

  Fly    67 PCKHPVVMLAGVNANDLEALLEFVYRGEVSVDHAQLPSLLQAAQCL------------------- 112
               ..:|:...:|....|.:|.|.|.|.:.:...::.|.|.||..|                   
  Rat   104 ---RRIVLPDVMNPRVFENILLFSYTGRLVMPAPEIVSYLTAASFLQMWHVVDKCTEVLEGNPTV 165

  Fly   113 -----------------NIQGLA------------------------PQTVTKDDYTTHSIQLQH 136
                             |..|||                        .:..|||:.::...:.::
  Rat   166 LCQKLNHGSDHQSPSSSNYNGLAESFELGSGGHTDFPKAQELRDGENEEESTKDELSSQVTEHEY 230

  Fly   137 MIPQHH--DQDQLIATIA----------------TAP----------QQTVHAQVVE-------- 165
             :|.:.  :.|:|...:|                |.|          ::.:|.:...        
  Rat   231 -LPSNSSTEHDRLSTEMASQDGEEGTNDSTEFHYTRPLYSKPSIMPHRRWIHVKPERLEQPWDGM 294

  Fly   166 DIH-----HQGQILQATTQTNAAGQQQTIVTTDAAKHDQAVIQAFLPARKRKPRVKKMSPTAPKI 225
            |:|     ||......|.||:.:.|      ...|:.:..:::            ||:.....:.
  Rat   295 DVHAAYDEHQVSESVNTMQTDHSAQ------PSGAEEEFQIVE------------KKVEVEFDEH 341

  Fly   226 SKVEGMDTIMGTPTSSHGSGSVQQVLGENGAEGQLLSSTPIIKSEGQKVETIVTMDPNNMIPVTS 290
            ::....|    .....:|| |:::..||....|.:          |.|.||.:....:..|.:..
  Rat   342 AEGSNYD----EQVDFYGS-SMEEFSGEKLGGGLI----------GHKQETALAAGYSENIEMVM 391

  Fly   291 ---------ANAATGEITPAQGATGSSGGNTSGVLSTPKAKRAKHPPGTEKPRSRSQSEQPATCP 346
                     ..:||.::.|.|          .|...|.|::|.:|       .|.....:|..|.
  Rat   392 GIKEEASHLGFSATDKLYPCQ----------CGKSFTHKSQRDRH-------MSMHLGLRPYGCS 439

  Fly   347 ICYAVIRQSRNLRRHLELRHFAKP----------------------GVKKEKKSKSGNDTT 385
            :|....:...:|..|:::....||                      ..|..:.:|:|.:||
  Rat   440 VCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSFHRHVTSCTKSYEAAKAGQNTT 500

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
TrlNP_001261846.1 BTB 27..117 CDD:279045 32/127 (25%)
BTB 35..118 CDD:197585 30/120 (25%)
GAGA 319..372 CDD:150045 11/74 (15%)
Zbtb43NP_001012094.1 BTB_POZ_ZBTB43 44..164 CDD:349536 32/122 (26%)
C2H2 Zn finger 412..430 CDD:275368 7/34 (21%)
C2H2 Zn finger 438..458 CDD:275368 4/19 (21%)
zf-H2C2_2 450..473 CDD:404364 4/22 (18%)
C2H2 Zn finger 466..483 CDD:275368 0/16 (0%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.