DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ind and HB5

DIOPT Version :10

Sequence 1:NP_996087.2 Gene:ind / 2768974 FlyBaseID:FBgn0025776 Length:320 Species:Drosophila melanogaster
Sequence 2:NP_201334.1 Gene:HB5 / 836656 AraportID:AT5G65310 Length:312 Species:Arabidopsis thaliana


Alignment Length:182 Identity:44/182 - (24%)
Similarity:69/182 - (37%) Gaps:45/182 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   156 GGLPL----------PEPGSFCTSPSASSSASLDYTNNFD--EPQGKRFKHESSCSPNSSPLKNH 208
            |.||:          |.|    |:.....|.:.||:..||  |..|.              |::.
plant    13 GFLPIRHSTTDKQISPRP----TTTGFLYSGAGDYSQMFDALEDDGS--------------LEDL 59

  Fly   209 SSGGPVEITPLINDYADSSKRIRTAFTSTQLLELEREFSHNAYLSRLRRIEIANRLRLSEKQVKI 273
            ...|....|.     |:..:|:..    .|:..||:.|..:..|...|::::|..|.|..:||.|
plant    60 GGVGHASSTA-----AEKKRRLGV----EQVKALEKNFEIDNKLEPERKVKLAQELGLQPRQVAI 115

  Fly   274 WFQNRRVK------QKKGGSESPTFNLSTNSNGSPQASPVSPQVKVHELKVE 319
            ||||||.:      ::..|.....|:....:..|.|....|...::.|||.:
plant   116 WFQNRRARWKTKQLERDYGVLKSNFDALKRNRDSLQRDNDSLLGQIKELKAK 167

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
indNP_996087.2 Homeodomain 228..284 CDD:459649 19/61 (31%)
HB5NP_201334.1 Homeodomain 72..125 CDD:459649 19/56 (34%)
HALZ 127..168 CDD:460477 8/41 (20%)

Return to query results.
Submit another query.