Protein Alignment ind and cdx4

DIOPT Version :10

• Sequence 1: NP_996087.2
• Gene: ind / 2768974
• FlyBaseID: FBgn0025776
• Length: 320
• Species: Drosophila melanogaster
• Sequence 2: NP_571184.2
• Gene: cdx4 / 798281
• ZFINID: ZDB-GENE-980526-330
• Length: 270
• Species: Danio rerio
• Alignment Length: 252
• Identity: 75/252 - (29%)
• Similarity: 103/252 - (40%)
• Gaps: 76/252 - (30%)

  Fly   104 SLYHPYA----------QLFASKRKSSGFSNYEGCYPSPPLSANPNSQQLPPIHNLYGSPVVGGL 158
            |:||..|          |.|.|..:.|.|:.|...         ||.:........:|:|.  |.
Zfish    12 SMYHQGAVRRSGISLPPQNFVSTPQYSDFTGYHHV---------PNMETHAQSAGAWGAPY--GA 65

  Fly   159 PLPEPGSFCTSPSASSSASLDYTNNFDEPQGKRFKHESSCSPNSSPLKNHSSGG-----PVEITP 218
            |..:.|::...|..|.||.:  :|:...|       .|.|||:.:.:  |..|.     |.|..|
Zfish    66 PREDWGAYSLGPPNSISAPM--SNSSPGP-------VSYCSPDYNTM--HGPGSAVLPPPPENIP 119

  Fly   219 LI---------NDYADSSKRI--------------RTAFTSTQLLELEREFSHNAYLSRLRRIEI 260
            :.         |.|...||.:              |..:|..|.||||:||..|.|::..|:.|:
Zfish   120 VAQLSPERERRNSYQWMSKTVQSSSTGKTRTKEKYRVVYTDHQRLELEKEFHFNRYITIRRKSEL 184

  Fly   261 ANRLRLSEKQVKIWFQNRRVKQKK------GGSESPTFNLSTNSNGSPQASP--VSP 309
            |..|.|||:||||||||||.|::|      |.|:        .|.||..:.|  |||
Zfish   185 AVNLGLSERQVKIWFQNRRAKERKLIKKKLGQSD--------GSGGSVHSDPGSVSP 233

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
ind	NP_996087.2	Homeodomain	228..284	CDD:459649	30/69 (43%)
cdx4	NP_571184.2	Caudal_act	13..146	CDD:461413	35/154 (23%)
		Homeodomain	153..208	CDD:459649	29/54 (54%)