Protein Alignment ind and nanog

DIOPT Version :10

• Sequence 1: NP_996087.2
• Gene: ind / 2768974
• FlyBaseID: FBgn0025776
• Length: 320
• Species: Drosophila melanogaster
• Sequence 2: NP_001091862.1
• Gene: nanog / 792333
• ZFINID: ZDB-GENE-030131-5486
• Length: 384
• Species: Danio rerio
• Alignment Length: 316
• Identity: 75/316 - (23%)
• Similarity: 110/316 - (34%)
• Gaps: 75/316 - (23%)

  Fly    36 AVAAAAMLP-----SIPMLPYPASYVGSYLFSLGIQQQQQQQQQQQQHAAAAAAAAAAAAALQQH 95
            |.|...|.|     .:|.|.:|.:   :|..|.|:                  .|....|...|.
Zfish    18 AYAYGLMYPQVSEHGVPNLSWPDA---AYTHSGGV------------------TAGYFTAQTAQS 61

  Fly    96 PHVSSSPGSLYHPYAQLFASKRKSSGFSNYEGCYPSPPL-SANPNSQQLPPIHNLYGSPVVGGLP 159
            |..|...|.....|:|.....:....|.:|....|.... .|...|...|.....:
Zfish    62 PPWSPENGGASSTYSQYPGHSQNGRLFLSYNKTEPDQKAKDAEQTSSDTPSDSEAH--------- 117

  Fly   160 LPEPGSFCTSPSASSSASLDYTN-NFDEPQGKRFKHESSCSPNSSPLKNHSSGG--PVEIT---- 217
              .|.|:   .||||...:..|| |....:.:.::.:|. ||:|......|:.|  ||.:.
Zfish   118 --TPDSW---SSASSREGVPLTNLNLPSWRDRDYETDSG-SPDSGERNLTSTAGEEPVNLNLGVD 176

  Fly   218 ---PLINDYADS------SKRIRTAFTSTQLLELEREFSHNAYLSRLRRIEIANRLRLSEKQVKI 273
               ||....|..      .::.|.||:..|:..|...|:...||:......:|....|:.||||.
Zfish   177 TQPPLPALTASPVRPPTLPRKTRAAFSEEQMNALVNRFNVQRYLTPAEMKTLAGATGLTYKQVKT 241

  Fly   274 WFQNRRVKQKKGGSESP------TFNLSTNSNGSP---QASP--------VSPQVK 312
            ||||||:|.|:...:|.      ..|...|:..|.   |:.|        ::|||:
Zfish   242 WFQNRRMKLKRHQRDSSWMTERYVVNAVPNTPASQSQFQSEPPGANQDHYINPQVR 297

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
ind	NP_996087.2	Homeodomain	228..284	CDD:459649	21/55 (38%)
nanog	NP_001091862.1	Homeodomain	196..252	CDD:459649	21/55 (38%)