Protein Alignment ind and Hoxa6

DIOPT Version :9

• Sequence 1: NP_996087.2
• Gene: ind / 2768974
• FlyBaseID: FBgn0025776
• Length: 320
• Species: Drosophila melanogaster
• Sequence 2: NP_001178016.1
• Gene: Hoxa6 / 685732
• RGDID: 1590236
• Length: 233
• Species: Rattus norvegicus
• Alignment Length: 299
• Identity: 89/299 - (29%)
• Similarity: 116/299 - (38%)
• Gaps: 86/299 - (28%)

  Fly    27 PGGSPTAAAAVAAAAMLPSIP-----MLPYPASYVGSYLFSLGIQQQQQQQQQQQQHAAAAAAAA 86
            ||..|:...:.  ...||..|     :.|:||||..|   ||..:........||.::..|...|
  Rat    11 PGSLPSGQDSF--LGQLPLYPAGYDALRPFPASYGAS---SLPDKTYTSPCFYQQSNSVLACNRA 70

  Fly    87 AAAAALQQHPHVSSSPGSLYHPYAQLFASKRKSSGFSNYEGCYPSPPLSANPNSQQLPPIHNLYG 151
            :                  |...|..|.|.:..||.|      ||      .||:|..|...|:.
  Rat    71 S------------------YEYGASCFYSDKDLSGAS------PS------GNSKQRGPGDYLHF 105

  Fly   152 SPVVGGLPLPEPGSFCTSPSASSSASLDYTNNFDEPQGKRFKHESSCSPNSSPL-----KNHSSG 211
            ||                       ...|..:....|||....|.:....:||:     :.:|..
  Rat   106 SP-----------------------EQQYKPDSSSVQGKALHEEGTDRKYTSPVYPWMQRMNSCA 147

  Fly   212 GPVEITPLINDYADSSKRIRTAFTSTQLLELEREFSHNAYLSRLRRIEIANRLRLSEKQVKIWFQ 276
            |.|        |....:|.|..:|..|.||||:||..|.||:|.|||||||.|.|:|:|:|||||
  Rat   148 GAV--------YGSHGRRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQ 204

  Fly   277 NRRVKQKKGGSESPTFNLSTNSNGSPQASPVSPQVKVHE 315
            |||:|.||   |:...|       |.|||....:.|..|
  Rat   205 NRRMKWKK---ENKLIN-------STQASGEDSEAKAGE 233

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
ind	NP_996087.2	Homeobox	231..283	CDD:278475	33/51 (65%)
Hoxa6	NP_001178016.1	Homeobox	159..212	CDD:395001	33/52 (63%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E2759_KOG0489
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	2	1.810