DRSC/TRiP Functional Genomics Resources

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Protein Alignment ind and hoxb3

DIOPT Version :10

Sequence 1:NP_996087.2 Gene:ind / 2768974 FlyBaseID:FBgn0025776 Length:320 Species:Drosophila melanogaster
Sequence 2:NP_001015971.1 Gene:hoxb3 / 548725 XenbaseID:XB-GENE-482576 Length:386 Species:Xenopus tropicalis


Alignment Length:248 Identity:80/248 - (32%)
Similarity:109/248 - (43%) Gaps:67/248 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   106 YHPYAQLFASKRKSSGFSNYEGCYPSPPLSANPNSQ---------------QLPPIHNLYGSPVV 155
            |:....||......:|...|||...|.|.|::.:::               .|....||.||   
 Frog     6 YYDNPTLFGGYPYQAGSLGYEGPQQSFPTSSHMDNEFQRSSCSLQSLGHSGPLVKAKNLNGS--- 67

  Fly   156 GGLPLPEPGSFCTSPSASSSAS--LDYTNNFDEPQGKRFKHESSCS-PNSSPLKNHSSGGPV--E 215
                       |..|:.||..|  |..|.|   |........|..| ...||.|:.:||.|.  :
 Frog    68 -----------CMRPNLSSEQSQPLSPTAN---PSSNTNSSSSQASLSKPSPAKSQASGSPASKQ 118

  Fly   216 ITPLINDY--------------------------ADSSKRIRTAFTSTQLLELEREFSHNAYLSR 254
            |.|.:.:.                          :.:|||.|||:||.||:|||:||..|.||.|
 Frog   119 IFPWMKESRQNSKQKSSPPAPAAESCGGDRSPPGSSASKRARTAYTSAQLVELEKEFHFNRYLCR 183

  Fly   255 LRRIEIANRLRLSEKQVKIWFQNRRVKQKKGGSESPTFNLSTNSNG-SPQASP 306
            .||:|:||.|.|||:|:||||||||:|.||   :.....:|::|.| ||.::|
 Frog   184 PRRVEMANLLNLSERQIKIWFQNRRMKYKK---DQKVKGMSSSSGGASPTSTP 233

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
indNP_996087.2 Homeodomain 228..284 CDD:459649 37/55 (67%)
hoxb3NP_001015971.1 Homeodomain 157..213 CDD:459649 37/55 (67%)
DUF4074 325..384 CDD:463833
Blue background indicates that the domain is not in the aligned region.

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