Protein Alignment ind and abd-A

DIOPT Version :10

• Sequence 1: NP_996087.2
• Gene: ind / 2768974
• FlyBaseID: FBgn0025776
• Length: 320
• Species: Drosophila melanogaster
• Sequence 2: NP_732176.1
• Gene: abd-A / 42037
• FlyBaseID: FBgn0000014
• Length: 590
• Species: Drosophila melanogaster
• Alignment Length: 386
• Identity: 93/386 - (24%)
• Similarity: 136/386 - (35%)
• Gaps: 134/386 - (34%)

  Fly    18 SQKKEKLGSPGGSPTAAAAVAAAAMLPSIPM---LPYPASYVGSYLFSLGIQQQQQQQQQQQQHA 79
            |.....|...|||.:.:.........|..|:   .|:...:.......|..||||....|||||.
  Fly    85 SNNNSNLNLSGGSLSPSHLSQHLGQSPHSPVSSSSPFQQHHPQVQQQHLNHQQQQHLHHQQQQHH 149

  Fly    80 AAAAAAAAAAAALQQHPHVS----SSPGSLYHPYAQLFASKRKSSGFSNY--EGCYPSPPLSANP 138
            ...::.:||....||..|:|    ::..|..|.:.||..:. .|:|.|..  ..|.|||..|.:.
  Fly   150 HQYSSLSAALQLQQQQHHISKLAAAAVASHGHAHQQLLLTP-PSAGNSQAGDSSCSPSPSASGSS 213

  Fly   139 NSQQLPPIHNLYGSPVVGGLPLPEPGSFCTSPSASSSASL---------DYTNNFDEPQGKRFKH 194
            :      :|.        .|....|||...|.|||:::|:         ..:::|..|..|.:.:
  Fly   214 S------LHR--------SLNDNSPGSASASASASAASSVAAAAAAAAAAASSSFAIPTSKMYPY 264

  Fly   195 ---------------------ESSCSPNSSPLKNH------------------------------ 208
                                 :.|||..:..:.|.
  Fly   265 VSNHPSSHGGLSGMAGFTGLEDKSCSRYTDTVMNSYQSMSVPASASAQFAQFYQHATAAASAVSA 329

  Fly   209 SSGGPVEITPL---------------------------------INDYADS-------------- 226
            :|.|.:.:..|                                 :.|:..|
  Fly   330 ASAGAIGVDSLGNACTQPASGVMPGAGGAGGAGIADLPRYPWMTLTDWMGSPFERVVCGDFNGPN 394

  Fly   227 ---SKRIRTAFTSTQLLELEREFSHNAYLSRLRRIEIANRLRLSEKQVKIWFQNRRVKQKK 284
               .:|.|..:|..|.||||:||..|.||:|.||||||:.|.|:|:|:||||||||:|.||
  Fly   395 GCPRRRGRQTYTRFQTLELEKEFHFNHYLTRRRRIEIAHALCLTERQIKIWFQNRRMKLKK 455

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
ind	NP_996087.2	Homeodomain	228..284	CDD:459649	33/55 (60%)
abd-A	NP_732176.1	Homeodomain	399..455	CDD:459649	33/55 (60%)
		Abdominal-A	456..478	CDD:403567	93/386 (24%)