Protein Alignment ind and Ubx

DIOPT Version :10

• Sequence 1: NP_996087.2
• Gene: ind / 2768974
• FlyBaseID: FBgn0025776
• Length: 320
• Species: Drosophila melanogaster
• Sequence 2: NP_536752.1
• Gene: Ubx / 42034
• FlyBaseID: FBgn0003944
• Length: 389
• Species: Drosophila melanogaster
• Alignment Length: 351
• Identity: 84/351 - (23%)
• Similarity: 132/351 - (37%)
• Gaps: 111/351 - (31%)

  Fly    24 LGSPG-GSPTAAAAVAAAAMLP-SIPMLPYPASYVGSYLFSLGIQQQQQQQQQQQQHAAAAAAAA 86
            :||.| ...||:||.||....| |:.|.||...::             |:..|...:.|:..||.
  Fly    23 MGSGGHHDQTASAAAAAYRGFPLSLGMSPYANHHL-------------QRTTQDSPYDASITAAC 74

  Fly    87 ------AAAAALQQHPHVSSSPGSLYHPYAQLFASK----------------------------R 117
                  .|.|..|...::.:...:.|........|.                            .
  Fly    75 NKIYGDGAGAYKQDCLNIKADAVNGYKDIWNTGGSNGGGGGGGGGGGGGAGGTGGAGNANGGNAA 139

  Fly   118 KSSGFSNYEGCYPSPPLSANPNSQQLPPIHNLYGSPV-------------------VGGLPLPEP 163
            .::|.:|..|..|..|.:..|:|:....:....||||                   .||:   :.
  Fly   140 NANGQNNPAGGMPVRPSACTPDSRVGGYLDTSGGSPVSHRGGSAGGNVSVSGGNGNAGGV---QS 201

  Fly   164 G-----------SFCTSPSA----SSSASLDYTNNF-------------DEPQGKRFKHE----S 196
            |           :.||...|    ::::||...:|.             ::|...:.:.:    .
  Fly   202 GVGVAGAGTAWNANCTISGAAAQTAAASSLHQASNHTFYPWMAIAGECPEDPTKSKIRSDLTQYG 266

  Fly   197 SCSPNSSPLKNHSSGGPVEITPLINDYADSS---KRIRTAFTSTQLLELEREFSHNAYLSRLRRI 258
            ..|.:.....:.|..|     .|:.|:..::   :|.|..:|..|.||||:||..|.||:|.|||
  Fly   267 GISTDMGKRYSESLAG-----SLLPDWLGTNGLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRI 326

  Fly   259 EIANRLRLSEKQVKIWFQNRRVKQKK 284
            |:|:.|.|:|:|:||||||||:|.||
  Fly   327 EMAHALCLTERQIKIWFQNRRMKLKK 352

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
ind	NP_996087.2	Homeodomain	228..284	CDD:459649	32/55 (58%)
Ubx	NP_536752.1	Homeodomain	296..352	CDD:459649	32/55 (58%)