DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ind and Nanog

DIOPT Version :10

Sequence 1:NP_996087.2 Gene:ind / 2768974 FlyBaseID:FBgn0025776 Length:320 Species:Drosophila melanogaster
Sequence 2:NP_001094251.1 Gene:Nanog / 414065 RGDID:1303178 Length:312 Species:Rattus norvegicus


Alignment Length:186 Identity:48/186 - (25%)
Similarity:70/186 - (37%) Gaps:38/186 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   135 SANPNSQQLPPIHNLYGSPVVGGLPLPEPGSFCTSPSAS------------SSASLDYTNNFDEP 187
            |.:.:|..:|.:|            |||....|...||:            ||..|...::.|..
  Rat    18 SNSGDSSPMPAVH------------LPEENYSCLQVSATEMLCTETASPPPSSGDLPLQDSPDSS 70

  Fly   188 QGKRFKHESSCSPNSSPLKNHSSGGPVEITPLINDYADSSKRIRTAFTSTQLLELEREFSHNAYL 252
            ...:.| .|....:..|.|...           |......:::||.|:..||..|:..|....||
  Rat    71 SNPKLK-LSGPEADEGPEKKEE-----------NKVLTKKQKMRTVFSQAQLCALKDRFQRQRYL 123

  Fly   253 SRLRRIEIANRLRLSEKQVKIWFQNRRVKQKKGGSES--PTFNLSTNSNGSPQASP 306
            |..:..:::..|.||.||||.||||:|:|.|:.....  .|.|..|....:|...|
  Rat   124 SLQQMQDLSTILNLSYKQVKTWFQNQRMKCKRWQKNQWLKTSNGLTQKGSAPVEYP 179

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
indNP_996087.2 Homeodomain 228..284 CDD:459649 23/55 (42%)
NanogNP_001094251.1 Homeodomain 100..155 CDD:459649 23/54 (43%)
PTZ00395 <184..>291 CDD:185594
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.