Protein Alignment ind and Lmx1a

DIOPT Version :10

• Sequence 1: NP_996087.2
• Gene: ind / 2768974
• FlyBaseID: FBgn0025776
• Length: 320
• Species: Drosophila melanogaster
• Sequence 2: NP_729801.1
• Gene: Lmx1a / 39406
• FlyBaseID: FBgn0052105
• Length: 640
• Species: Drosophila melanogaster
• Alignment Length: 417
• Identity: 90/417 - (21%)
• Similarity: 116/417 - (27%)
• Gaps: 186/417 - (44%)

  Fly    10 LLSDRPNLSQKKEKLGSPGGSP-----------TAAAAVAAAAMLPSIPMLPYPASYVGSYLFSL 63
            |.|...|.:.......:.|||.           ||||..||:|...:.|. |...|...|.|..
  Fly   123 LSSSSSNSNHNNNNNNNNGGSSSNNLHSACNTLTAAAVAAASAAAVAAPS-PAGTSVATSQLGG- 185

  Fly    64 GIQQQQQQQQQQQQHAAAAAAAAAAAAALQQHPHVSSSPGSLYHPYAQLFASKRKSSGFSNYEGC 128
                           |.|||.|||||||.......|:.|       |...:.....||..|..|
  Fly   186 ---------------AVAAAIAAAAAAAAAATTPTSTGP-------AATGSGNANGSGNGNGNG- 227

  Fly   129 YPSPPLSANPNSQQLPPIHNLYGSPVVGGLPLPEPGSFCTSPSASSSASLDYT-----------N 182
                  :.|.|.       |..|:   ||      |:...|.:|:|..|.|.:           .
  Fly   228 ------NGNGNG-------NGNGN---GG------GAATASAAAASKLSADCSGRTEVGHIKCEK 270

  Fly   183 NFDEPQG------KRFK--------HE-------------------------------------S 196
            ||:..:|      .||.        ||                                     |
  Fly   271 NFELCEGCGQKIHDRFLMNVGDANWHEQCLACCYCGMQLHHTCYVRNSKLYCKMDYDRLFGVKCS 335

  Fly   197 SCS-------------PN-------------SSPLK----------------------------- 206
            ||.             ||             ..||:
  Fly   336 SCCHAILPQELVMRPIPNFVFHLPCFVCYACRLPLQKGEQFMLRDGQLFCYRHDLEKEMFLAAAA 400

  Fly   207 -NHSSGGPVEITPLI--NDYADSSKRIRTAFTSTQLLELEREFSHNAYLSRLRRIEIANRLRLSE 268
             .|.....::...|:  .|.....||.||..||.|..:.:..|..:....|..|..:|....||.
  Fly   401 AQHCGFVGLDEEDLLRPRDGRRGPKRPRTILTSQQRKQFKASFDQSPKPCRKVREALAKDTGLSV 465

  Fly   269 KQVKIWFQNRRVKQKK--------GGS 287
            :.|::||||:|.|.||        |||
  Fly   466 RVVQVWFQNQRAKMKKIQRKAKQNGGS 492

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
ind	NP_996087.2	Homeodomain	228..284	CDD:459649	20/55 (36%)
Lmx1a	NP_729801.1	LIM1_Lmx1b	275..327	CDD:188757	5/51 (10%)
		LIM	333..388	CDD:413332	7/54 (13%)
		Homeodomain	425..481	CDD:459649	20/55 (36%)