DRSC/TRiP Functional Genomics Resources

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Protein Alignment ind and Gsx2

DIOPT Version :9

Sequence 1:NP_996087.2 Gene:ind / 2768974 FlyBaseID:FBgn0025776 Length:320 Species:Drosophila melanogaster
Sequence 2:NP_001131035.2 Gene:Gsx2 / 364140 RGDID:1308047 Length:305 Species:Rattus norvegicus


Alignment Length:372 Identity:109/372 - (29%)
Similarity:133/372 - (35%) Gaps:171/372 - (45%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MSRSFLMDSLL---SDRP----------------------------------------------- 15
            |||||.:|||:   |.||                                               
  Rat     1 MSRSFYVDSLIIKDSSRPAPSLPESHPGPDFFIPLGMPSPLVMSVSGPGCPSRKSGAFCVCPLCV 65

  Fly    16 --NLSQKKEKLGSPGGSP-TAAAAVAAAAMLPSIPMLPYPASYVGSYLFSLG------------- 64
              :|...:...|:.||:. ||.||||...:......||...|.     ||.|             
  Rat    66 TSHLHSSRPPAGAGGGATGTAGAAVAGGGVAGGTGALPLLKSQ-----FSPGPGDAQFCPRVSHA 125

  Fly    65 -----IQQQQQQQQQQQQHAAAAAAAAAAAAALQQHPHVSSSPGSLYHPYAQLFASKRKSSGFSN 124
                 ..|......|.||..:|||||||||||       :::..:|.||.               
  Rat   126 HHHHHAPQHHHHHHQPQQPGSAAAAAAAAAAA-------AAAAAALGHPQ--------------- 168

  Fly   125 YEGCYPSPPLSANPNSQQLPPIHNLYGSPVVGGLPLPEPGSFCTSPSASSSASLDYTNNFDEPQG 189
                                     :.:||            |.:.          |.|..:|  
  Rat   169 -------------------------HHAPV------------CAAT----------TYNVSDP-- 184

  Fly   190 KRFKHESSCSPNSSPLKNHSSGGPVEITPLINDYADSSKRIRTAFTSTQLLELEREFSHNAYLSR 254
            :||...:....::|.:.|                   .||:|||||||||||||||||.|.||||
  Rat   185 RRFHCLTMGGSDTSQVPN-------------------GKRMRTAFTSTQLLELEREFSSNMYLSR 230

  Fly   255 LRRIEIANRLRLSEKQVKIWFQNRRVKQKKGGSESPTFNLSTNSNGS 301
            |||||||..|.||||||||||||||||.||.|.     ..|.|::.|
  Rat   231 LRRIEIATYLNLSEKQVKIWFQNRRVKHKKEGK-----GASRNNHAS 272

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
indNP_996087.2 Homeobox 231..283 CDD:278475 46/51 (90%)
Gsx2NP_001131035.2 Homeobox 207..260 CDD:395001 46/52 (88%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 98 1.000 Domainoid score I7019
eggNOG 1 0.900 - - E2759_KOG0489
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1341872at2759
OrthoFinder 1 1.000 - - FOG0005158
OrthoInspector 1 1.000 - - otm44565
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
76.910

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