DRSC/TRiP Functional Genomics Resources

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Protein Alignment ind and Hlx

DIOPT Version :10

Sequence 1:NP_996087.2 Gene:ind / 2768974 FlyBaseID:FBgn0025776 Length:320 Species:Drosophila melanogaster
Sequence 2:NP_001071142.1 Gene:Hlx / 364069 RGDID:1311961 Length:476 Species:Rattus norvegicus


Alignment Length:381 Identity:93/381 - (24%)
Similarity:128/381 - (33%) Gaps:140/381 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 SFLMDSLLSDRPNL---SQKKEKLGSPGGSPTAAAAVAAAAMLPS----------------IPML 49
            ||.:|.....:|:.   ......:|.||  |.|...|.|:|.|.:                .|:.
  Rat    31 SFALDPAAVKKPSFCIADILHAGVGEPG--PAAEGLVGASAALTAHLGSVHPHASFQAAARSPLR 93

  Fly    50 PYPASYVGSYLFSLGIQQQ-------------QQQQQQQQQHAAAAAAAAAAAAALQQHPHVSSS 101
            |.|.  |.......|..|:             ||...||||.              ||.|.....
  Rat    94 PTPV--VAPSEVPAGFPQRLSPLSAAYHQHLPQQPPTQQQQP--------------QQQPPPPPR 142

  Fly   102 PGSLYHPYAQLFASKRKSSG---FSNYEGCYPSPP-----------LSA--NPNSQQLPPIHNLY 150
            .|||..|          :||   ..::.|..|:|.           |||  :|..::...:.:| 
  Rat   143 AGSLQPP----------TSGTRVVPHHSGSAPAPSSKDLKFGIDRILSAEFDPKVKEGNTLRDL- 196

  Fly   151 GSPVVGGLPL--------PEPGSFCTS--PSASSSASLDYTNNFDEPQGKRFKHESSCSPNSSPL 205
            .|.:.||.|.        |..|.|..|  |.:.:||.|                    ||.||..
  Rat   197 TSLLTGGRPTGVHLAGLQPSAGQFFASLDPISEASAIL--------------------SPLSSNP 241

  Fly   206 KN-------HSSGGPVEITPLIND-----YADSSKRIRTAFTSTQLLELEREFSHNAYLSRLRRI 258
            :|       .:..||..:  |..|     |.......|..|::.|...||:.|....|:::..|.
  Rat   242 RNSVQHQFQDTFPGPYAV--LTKDTMPQTYKRKRSWSRAVFSNLQRKGLEKRFEIQKYVTKPDRK 304

  Fly   259 EIANRLRLSEKQVKIWFQNRRVK---------QK---KGGSESPTFNLSTNSNGSP 302
            ::|..|.|::.|||:||||||:|         ||   |...|.|       |.|.|
  Rat   305 QLAAMLGLTDAQVKVWFQNRRMKWRHSKEAQAQKDKDKEAGEKP-------SGGVP 353

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
indNP_996087.2 Homeodomain 228..284 CDD:459649 23/67 (34%)
HlxNP_001071142.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 121..170 18/72 (25%)
Homeodomain 270..330 CDD:459649 21/59 (36%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 328..401 8/33 (24%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 413..476
Blue background indicates that the domain is not in the aligned region.

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