Protein Alignment ind and ap

DIOPT Version :10

• Sequence 1: NP_996087.2
• Gene: ind / 2768974
• FlyBaseID: FBgn0025776
• Length: 320
• Species: Drosophila melanogaster
• Sequence 2: NP_724428.1
• Gene: ap / 35509
• FlyBaseID: FBgn0267978
• Length: 469
• Species: Drosophila melanogaster
• Alignment Length: 331
• Identity: 69/331 - (20%)
• Similarity: 118/331 - (35%)
• Gaps: 110/331 - (33%)

  Fly    65 IQQQQQQQQQQQQHAAAAAAAAAAAAALQQHPHVSSSPGSLY--HPYAQLFASKRKS---SGFSN 124
            ||.:......:::..|:.....|....|::.....|..|::|  :.|...|.::|.|   :..|:
  Fly   155 IQDRFYLSAVEKRWHASCLQCYACRQPLERESSCYSRDGNIYCKNDYYSFFGTRRCSRCLASISS 219

  Fly   125 YEGCYPSPPLSANPNSQQLPPIH------NLYGSPVVGGLPLPEPGSFC----------TSPSAS 173
            .|....:..|..:.|.......|      :.||  ::..|      .:|          .:.|:|
  Fly   220 NELVMRARNLVFHVNCFCCTVCHTPLTKGDQYG--IIDAL------IYCRTHYSIAREGDTASSS 276

  Fly   174 SSASLDYTNNFDEPQGKRFKHESSCSPNSSPLKN---------------------HSSGGPVEIT 217
            .||:..|:..|..|      |..|.||:|.|.::                     ...|.|.:..
  Fly   277 MSATYPYSAQFGSP------HNDSSSPHSDPSRSIVPTGIFVPASHVINGLPQPARQKGRPRKRK 335

  Fly   218 P-----------LINDYAD-----------SSKRIRTAFTSTQLLELEREF--SHNAYLSRLRRI 258
            |           |..:|.|           .:||:||:|...||..::..|  :||.....|:
  Fly   336 PKDIEAFTANIDLNTEYVDFGRGSHLSSSSRTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLK-- 398

  Fly   259 EIANRLRLSEKQVKIWFQN-----RRVKQKKGGS-----------------ESPT-FNLSTNSNG 300
            :::.:..|.::.:::||||     ||:..|:.||                 .||| |.|     |
  Fly   399 QLSQKTGLPKRVLQVWFQNARAKWRRMMMKQDGSGLLEKGEGALDLDSISVHSPTSFIL-----G 458

  Fly   301 SPQASP 306
            .|.::|
  Fly   459 GPNSTP 464

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
ind	NP_996087.2	Homeodomain	228..284	CDD:459649	18/62 (29%)
ap	NP_724428.1	LIM1_Lhx2_Lhx9	148..201	CDD:188755	8/45 (18%)
		LIM2_Lhx2_Lhx9	206..264	CDD:188763	11/65 (17%)
		Homeodomain	368..424	CDD:459649	16/57 (28%)