DRSC/TRiP Functional Genomics Resources

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Protein Alignment ind and Lim3

DIOPT Version :10

Sequence 1:NP_996087.2 Gene:ind / 2768974 FlyBaseID:FBgn0025776 Length:320 Species:Drosophila melanogaster
Sequence 2:NP_001260559.1 Gene:Lim3 / 35184 FlyBaseID:FBgn0002023 Length:555 Species:Drosophila melanogaster


Alignment Length:365 Identity:73/365 - (20%)
Similarity:111/365 - (30%) Gaps:141/365 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly    66 QQQQQQQQQQQQHAAAAAAAAAAAAALQQHPHVSSSPGSLYHPYAQLFASKRKSSGFSNYEGCYP 130
            |.|.|.|...||               |.|||     ..|.||..|    ::..|...|::...|
  Fly    16 QHQHQLQHPPQQ---------------QPHPH-----QQLQHPLQQ----QQHLSAMDNHQQHQP 56

  Fly   131 SPPLSANPNSQQLPPIHNLYGSPVVGGL------------------PLPEPGSFCTSPSASSSAS 177
            ... ......|||||...  .|.:|||.                  |.||......|.:.:..|:
  Fly    57 HIH-QQQQQQQQLPPTPQ--ASHLVGGQQQQQQHPHHNHLAVDQDDPNPELVLALISRNRALEAT 118

  Fly   178 LDYTNNFDE-----------------------------------PQGKRFKHE----------SS 197
            :.......|                                   ..|:.|..|          |:
  Fly   119 IPKCGGCHELILDRFILKVLERTWHAKCLQCSECHGQLNDKCFARNGQLFCKEDFFKRYGTKCSA 183

  Fly   198 CSPNSSPL----------------------KNHSSGGP---VEITPLI--NDYADS--------- 226
            |.....|.                      :..::|..   :|...||  .||.::         
  Fly   184 CDMGIPPTQVVRRAQDNVYHLQCFLCAMCSRTLNTGDEFYLMEDRKLICKRDYEEAKAKGLYLDG 248

  Fly   227 -------SKRIRTAFTSTQLLELEREFSHNAYLSRLRRIEIANRLRLSEKQVKIWFQNRRVKQKK 284
                   :||.||..|:.||..|:..::::...:|..|.:::....|..:.|::||||||.|:|:
  Fly   249 SLDGDQPNKRPRTTITAKQLETLKTAYNNSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKR 313

  Fly   285 -----GGSESPTFNLSTNSNGSPQASPVSPQVKVHELKVE 319
                 |.:....:..|...|.||:....   :...||||:
  Fly   314 LKKDAGRTRWSQYFRSMKGNCSPRTDKF---LDKDELKVD 350

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
indNP_996087.2 Homeodomain 228..284 CDD:459649 19/55 (35%)
Lim3NP_001260559.1 LIM1_Lhx3_Lhx4 122..173 CDD:188754 4/50 (8%)
LIM2_Lhx3_Lhx4 181..236 CDD:188762 7/54 (13%)
Homeodomain 257..313 CDD:459649 19/55 (35%)

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