Protein Alignment ind and scro

DIOPT Version :10

• Sequence 1: NP_996087.2
• Gene: ind / 2768974
• FlyBaseID: FBgn0025776
• Length: 320
• Species: Drosophila melanogaster
• Sequence 2: NP_001015473.1
• Gene: scro / 3355151
• FlyBaseID: FBgn0287186
• Length: 468
• Species: Drosophila melanogaster
• Alignment Length: 308
• Identity: 85/308 - (27%)
• Similarity: 115/308 - (37%)
• Gaps: 85/308 - (27%)

  Fly    60 LFSLGIQQQQQ--------QQQQQQQHAAAAAAAAAAAAALQQHPHVSSSPGSLYHPYAQLFASK 116
            |....|.|..|        ..:...|:..:.|||||.|     |.|.:.|  |::|  .|...|:
  Fly    47 LIHTAISQHHQVDTSTKLNTNETSTQNTVSTAAAAAVA-----HHHHNLS--SIHH--LQNLHSQ 102

  Fly   117 RKSSGF-SNYEGCYPSPPLSANPNSQQLPPIHNLYGSPVVGGLP------------LPEPGSFCT 168
            .:|:.| ||:     |.|.|.   :..|.||...|....:.|.|            :..||:..|
  Fly   103 HQSTLFNSNH-----STPFSV---TDILSPIEESYRKLELNGNPPSPFRSNSSSSSINSPGTLTT 159

  Fly   169 SPSAS---------------------------------SSASLDYTNNFDEPQGKRFK----HES 196
            |..|:                                 :|||. |.:..::|   ||.    ..|
  Fly   160 STMANPYAMGTLYHSPGVQTYCGPTDNLSLAGHYTDMRNSASW-YGSTANDP---RFAISRLMSS 220

  Fly   197 SCSPNSSPLKNHSSGGPVEIT---PLINDYADSSKRIRTAFTSTQLLELEREFSHNAYLSRLRRI 258
            |.|...|.:.|.|......::   ||....|...|| |..||..|:.||||.|....|||...|.
  Fly   221 SASGTMSHMGNMSGLAACSVSDSKPLQFPLAQRRKR-RVLFTQAQVYELERRFKQQRYLSAPERE 284

  Fly   259 EIANRLRLSEKQVKIWFQNRRVKQKKGGSESPTFNLSTNSNGSPQASP 306
            .:|:.:.|:..||||||||.|.|.|:...|...  ...|.:..|.:||
  Fly   285 HLASLIHLTPTQVKIWFQNHRYKCKRQAKEKAM--AEQNQHNQPASSP 330

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
ind	NP_996087.2	Homeodomain	228..284	CDD:459649	27/55 (49%)
scro	NP_001015473.1	Homeodomain	254..310	CDD:459649	27/56 (48%)