Protein Alignment ind and Hoxc5

DIOPT Version :10

• Sequence 1: NP_996087.2
• Gene: ind / 2768974
• FlyBaseID: FBgn0025776
• Length: 320
• Species: Drosophila melanogaster
• Sequence 2: NP_001101586.1
• Gene: Hoxc5 / 315341
• RGDID: 1307584
• Length: 222
• Species: Rattus norvegicus
• Alignment Length: 207
• Identity: 66/207 - (31%)
• Similarity: 90/207 - (43%)
• Gaps: 58/207 - (28%)

  Fly   136 ANPNSQQLP--PIHNL-----YGSP--------VVGGL--------PLP-----------EPGSF 166
            ||...:|.|  |.:|:     |||.        ..|||        |.|           .|.:.
  Rat     6 ANSFYKQSPNIPAYNMQTCGNYGSASEVQASRYCYGGLDLSITFPPPAPSNSLHGVDMAANPRAH 70

  Fly   167 CTSPSASSSASLDYTNNFDE--PQGKRFKHESSCSP-------NSSPLKNH--SSGGPVEI---- 216
            ...|:.|::|:..:....||  |.......:.:..|       :|..:|..  .:|.|..:
  Rat    71 PDRPACSAAAAPGHALGRDEAAPLNPGMYSQKAARPALEERAKSSGEIKEEQAQTGQPAGLSQPP 135

  Fly   217 ---------TPLINDYADSSKRIRTAFTSTQLLELEREFSHNAYLSRLRRIEIANRLRLSEKQVK 272
                     |.|...:....||.||::|..|.||||:||..|.||:|.|||||||.|.|:|:|:|
  Rat   136 APPQIYPWMTKLHMSHETDGKRSRTSYTRYQTLELEKEFHFNRYLTRRRRIEIANNLCLNERQIK 200

  Fly   273 IWFQNRRVKQKK 284
            |||||||:|.||
  Rat   201 IWFQNRRMKWKK 212

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
ind	NP_996087.2	Homeodomain	228..284	CDD:459649	36/55 (65%)
Hoxc5	NP_001101586.1	Homeodomain	156..212	CDD:459649	36/55 (65%)