Protein Alignment ind and Nkx3-1

DIOPT Version :10

• Sequence 1: NP_996087.2
• Gene: ind / 2768974
• FlyBaseID: FBgn0025776
• Length: 320
• Species: Drosophila melanogaster
• Sequence 2: NP_001029316.1
• Gene: Nkx3-1 / 305999
• RGDID: 1305369
• Length: 238
• Species: Rattus norvegicus
• Alignment Length: 176
• Identity: 58/176 - (32%)
• Similarity: 80/176 - (45%)
• Gaps: 29/176 - (16%)

  Fly   156 GGLPLPEPGSFCTSPSASSSASLDYTN----NFDEPQGKRFKHESSCSPNSSPLKNHSSGG---- 212
            ||.|..........|...|::.||...    ..::|.|.|      .||..:..:..|...
  Rat    47 GGQPSTPQHQCQPDPKRDSASELDEAEGSSVTLEDPPGIR------SSPTETRAETESDAHFETY 105

  Fly   213 --PVEITPLIND----YADSSKRIRTAFTSTQLLELEREFSHNAYLSRLRRIEIANRLRLSEKQV 271
              ..|.||:::.    .....||.|.||:.||::||||:|||..|||...|..:|..|:|:|.||
  Rat   106 LLDCEHTPVLSSAPQVTKQPQKRSRAAFSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQV 170

  Fly   272 KIWFQNRRVKQKKGG--------SESPTFNLSTNSNGS-PQASPVS 308
            ||||||||.|.|:..        .::.|.:|.|..:.| .:||.||
  Rat   171 KIWFQNRRYKTKRRQLSEDLGVLEKNSTLSLPTLKDDSLSRASLVS 216

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
ind	NP_996087.2	Homeodomain	228..284	CDD:459649	33/55 (60%)
Nkx3-1	NP_001029316.1	Homeodomain	127..183	CDD:459649	33/55 (60%)