DRSC/TRiP Functional Genomics Resources

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Protein Alignment ind and Hoxb1

DIOPT Version :10

Sequence 1:NP_996087.2 Gene:ind / 2768974 FlyBaseID:FBgn0025776 Length:320 Species:Drosophila melanogaster
Sequence 2:NP_001094022.1 Gene:Hoxb1 / 303491 RGDID:1310298 Length:297 Species:Rattus norvegicus


Alignment Length:308 Identity:97/308 - (31%)
Similarity:130/308 - (42%) Gaps:62/308 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    31 PTAAAAVAAAAMLPSIPMLPYPA--SYVGSYLFSLGIQQQQQQQQQQQQHAAAAAAAAAAAAALQ 93
            |:|.:|..      |.|....||  ||.|...:..|:.....||.              :...:|
  Rat    19 PSAYSAPT------SFPPSSAPAVDSYAGESRYGGGLPSSALQQN--------------SGYPVQ 63

  Fly    94 QHPH---VS--SSPGSLYHPYA---QLFASKRKSSGFSNYEGCYPSPPLSANPNSQQLPPIHNLY 150
            |.|.   ||  ||..|.|.|.|   ....|:..|.|.|..:|.|..|    :....||..:.:.|
  Rat    64 QPPSSLGVSFPSSAPSGYAPAACNPSYGPSQYYSMGQSEGDGGYFHP----SSYGAQLGGLPDSY 124

  Fly   151 GSPVVGGLPLPEPGSFCTSPSASSSASLDYTNNFDEPQGKRFKHESSCSPNSSPLKNHS------ 209
            |:..||..|.|.|     .|...:..:.::.:.:|.....:   |||||...|.|...:      
  Rat   125 GAGGVGSGPYPPP-----QPPYGTEQTSNFASAYDLLSEDK---ESSCSSEPSSLTARTFDWMKV 181

  Fly   210 SGGPVEITPLINDYADSSKRIRTAFTSTQLLELEREFSHNAYLSRLRRIEIANRLRLSEKQVKIW 274
            ...|.:...:......:...:||.||:.||.|||:||..|.||||.||:|||..|.|:|.|||||
  Rat   182 KRNPPKTAKVSELGLGTPGGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIW 246

  Fly   275 FQNRRVKQKK----GG----------SESPTFNLSTNSNGSPQASPVS 308
            |||||:||||    ||          .|:.......::..||:|||.|
  Rat   247 FQNRRMKQKKREREGGRVPAGPPGCPKEAAGEASDQSACTSPEASPSS 294

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
indNP_996087.2 Homeodomain 228..284 CDD:459649 36/55 (65%)
Hoxb1NP_001094022.1 None

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