DRSC/TRiP Functional Genomics Resources

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Protein Alignment ind and Hoxb3

DIOPT Version :10

Sequence 1:NP_996087.2 Gene:ind / 2768974 FlyBaseID:FBgn0025776 Length:320 Species:Drosophila melanogaster
Sequence 2:NP_001100512.1 Gene:Hoxb3 / 303488 RGDID:1310780 Length:429 Species:Rattus norvegicus


Alignment Length:282 Identity:92/282 - (32%)
Similarity:128/282 - (45%) Gaps:79/282 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    92 LQQHPHVSSSPGSLYHPYAQLFASKRKSSGFSNYEGCYPSPPLSANPNSQ--------QLPPIHN 148
            :|:..:..::..:|:..|    :|...|:|| .|:| .|.||..|..:.:        .|..:.|
  Rat     1 MQKATYYDNTAAALFGGY----SSYPGSNGF-GYDG-PPQPPFQAATHLEGDYQRSACSLQSLGN 59

  Fly   149 ---------LYGSPVVGGL---PLP-EPGSFCTSPSASSSASLDYTNNFDEPQGKRFKHESSCSP 200
                     |.||.:..||   ||| .|||  ..|||:.:::...:||...| .|....:...|.
  Rat    60 AAPHAKSKELNGSCMRPGLAPEPLPAPPGS--PPPSAAPTSTTSNSNNGGGP-SKSGPPKCGASS 121

  Fly   201 NS----------------SPLKNH--------------------------SSGGPVEITPLINDY 223
            ||                |.|||.                          |.||..:.:|   ..
  Rat   122 NSTLTKQIFPWMKESRQTSKLKNSSPGTAEGCGGGGGGGGGGGSSSGGGGSGGGGGDKSP---PG 183

  Fly   224 ADSSKRIRTAFTSTQLLELEREFSHNAYLSRLRRIEIANRLRLSEKQVKIWFQNRRVKQKKGGSE 288
            :.:|||.|||:||.||:|||:||..|.||.|.||:|:||.|.|||:|:||||||||:|.||   :
  Rat   184 SAASKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLSERQIKIWFQNRRMKYKK---D 245

  Fly   289 SPTFNLSTNSNG-SPQASPVSP 309
            .....|:::|.| ||..||..|
  Rat   246 QKAKGLASSSGGPSPAGSPPQP 267

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
indNP_996087.2 Homeodomain 228..284 CDD:459649 37/55 (67%)
Hoxb3NP_001100512.1 Homeodomain 188..244 CDD:459649 37/55 (67%)
DUF4074 365..427 CDD:463833
Blue background indicates that the domain is not in the aligned region.

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