DRSC - DRSC Integrative Ortholog Prediction Tool

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Protein Alignment ind and hoxd4a

DIOPT Version :9

Sequence 1:	NP_996087.2	Gene:	ind / 2768974	FlyBaseID:	FBgn0025776	Length:	320	Species:	Drosophila melanogaster
Sequence 2:	NP_001119917.1	Gene:	hoxd4a / 30329	ZFINID:	ZDB-GENE-980526-214	Length:	256	Species:	Danio rerio

Alignment Length:	199	Identity:	64/199 - (32%)
Similarity:	89/199 - (44%)	Gaps:	49/199 - (24%)

- Green bases have known domain annotations that are detailed below.

  Fly    94 QHPHVSSSPGSLYHPY--AQLFASKRKSSGFSNYEGCYPSP-PLSANPNSQQLPPIHNLYGSPVV 155
            |||.:.|.......||  :.:..|..:..|....:...||| |    ..::|.|.: .:.||...
Zfish    66 QHPGIYSRSNYSEQPYSCSTVQGSSVQPRGHVQDQASTPSPFP----AQTEQCPAV-QISGSRTG 125

  Fly   156 GGLPLPEPGSFCTSPSASSSASLDYTNNFDEPQGKRFKHESSCSPNSSPLKNHSSGGP----VEI 216
            |                                    :.:::.:.|..|.|..:...|    |.:
Zfish   126 G------------------------------------QQQNTKTQNGIPTKQPAVVYPWMKKVHV 154

  Fly   217 TPLINDY-ADSSKRIRTAFTSTQLLELEREFSHNAYLSRLRRIEIANRLRLSEKQVKIWFQNRRV 280
            |.:..|| ....||.|||:|..|:||||:||..|.||:|.||||||:.|.|||:|:||||||||:
Zfish   155 TTVNPDYTGPEPKRSRTAYTRQQVLELEKEFHFNRYLTRRRRIEIAHTLCLSERQIKIWFQNRRM 219

  Fly   281 KQKK 284
            |.||
Zfish   220 KWKK 223

Known Domains:

Indicated by green bases in alignment.

Gene	Sequence	Domain	Region	External ID	Identity
ind	NP_996087.2	Homeobox	231..283	CDD:278475	35/51 (69%)
hoxd4a	NP_001119917.1	Homeobox	169..222	CDD:278475	35/52 (67%)

Information from Original Tools:

Tool	Simple Score	Weighted Score	Original Tool Information
Tool	Simple Score	Weighted Score	BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E2759_KOG0489
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
ZFIN	0	0.000	Not matched by this tool.
	3	2.810