Protein Alignment ind and Hmx3

DIOPT Version :10

• Sequence 1: NP_996087.2
• Gene: ind / 2768974
• FlyBaseID: FBgn0025776
• Length: 320
• Species: Drosophila melanogaster
• Sequence 2: NP_001099772.1
• Gene: Hmx3 / 293537
• RGDID: 1559927
• Length: 356
• Species: Rattus norvegicus
• Alignment Length: 271
• Identity: 78/271 - (28%)
• Similarity: 101/271 - (37%)
• Gaps: 90/271 - (33%)

  Fly    79 AAAAAAAAAAAA------------------------------ALQQHPHVSSSP----------- 102
            ||||||||||||                              ||..| ::..||
  Rat    62 AAAAAAAAAAAAKGALEGAAGFALSQVGDLAFPRFEIPAQRFALPAH-YLERSPAWWYPYTLTPA 125

  Fly   103 -GSLYHPYAQLFASKRKSSGFSNYEGCYPSPPLSANPNSQQLPPIHNLYGSPVVGGLPLPEPGSF 166
             |.|..|.|...|..|.||..|..:...|.|.|.|:|:.::|.
  Rat   126 GGHLPRPEASEKALLRDSSPASGTDRDSPDPLLKADPDHKELD---------------------- 168

  Fly   167 CTSPSASSSASLDYTNNFDEPQGKRFKHESSCSPNSSPLKNHSSGGPVEITPLINDY---ADS-- 226
                  |.|.........|..:||:   |....|.::    .::.|....||...|:   |||
  Rat   169 ------SKSPDEIILEESDSEEGKK---EGEAVPGAA----GTTVGATAATPGSEDWKAGADSPE 220

  Fly   227 ------SKRIRTAFTSTQLLELEREFSHNAYLSRLRRIEIANRLRLSEKQVKIWFQNRRVKQKKG 285
                  .|:.||.|:.:|:.:||..|....|||...|..:|..|.|:|.||||||||||.|.|:.
  Rat   221 KKPACRKKKTRTVFSRSQVFQLESTFDMKRYLSSSERAGLAASLHLTETQVKIWFQNRRNKWKRQ 285

  Fly   286 -GSESPTFNLS 295
             .:|....|||
  Rat   286 LAAELEAANLS 296

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
ind	NP_996087.2	Homeodomain	228..284	CDD:459649	27/55 (49%)
Hmx3	NP_001099772.1	Homeodomain	228..284	CDD:459649	27/55 (49%)