Protein Alignment ind and Hoxd1

DIOPT Version :9

• Sequence 1: NP_996087.2
• Gene: ind / 2768974
• FlyBaseID: FBgn0025776
• Length: 320
• Species: Drosophila melanogaster
• Sequence 2: NP_001099354.1
• Gene: Hoxd1 / 288151
• RGDID: 1309179
• Length: 328
• Species: Rattus norvegicus
• Alignment Length: 341
• Identity: 94/341 - (27%)
• Similarity: 130/341 - (38%)
• Gaps: 94/341 - (27%)

  Fly    14 RPNLSQKKEKLGSPGGSPTAAAAVAAAAMLPSIPMLP-------------YPASYVGSYLFSLGI 65
            ||...|....|||..|:..:...:|||...||.|:.|             .|.:..|:|
  Rat    36 RPVALQPAFPLGSGDGAFVSCLPLAAARPTPSPPVAPAQPPGPQPAASRYAPCTLEGAY------ 94

  Fly    66 QQQQQQQQQQQQHAAAAAAA---------------AAAAAALQQHPHVSSSPGSLYHPYAQLFAS 115
                      ::.||.|:||               |...||....|||..:..:::........|
  Rat    95 ----------ERGAAPASAAEYGFLGSGPAFDFPGALGRAADDSGPHVHYATSAVFSSGGSFLLS 149

  Fly   116 KRKSSGFSNYEGCYPSPPLSANPNSQQLPPIHNLYGSPVVGGLPLPEPGSFCTSPSASSSASLDY 180
            .:..  |:.:....|.|.....|......|...:  ||..|..|.|      .||::...|:
  Rat   150 GQVD--FAAFAEPGPFPACLKEPADGHPGPFQTV--SPAPGACPKP------ASPTSGLPAA--- 201

  Fly   181 TNNFDEPQGKRFKHESSCSPNSSPLKNHSSGGPVEITPLINDYADSSKRIRTAFTSTQLLELERE 245
            .:.|:..:.||      .:|..|.|..:.:..|             |..|||.|::.||.|||:|
  Rat   202 HSTFEWMKVKR------NAPKKSKLSEYGATSP-------------SSAIRTNFSTKQLTELEKE 247

  Fly   246 FSHNAYLSRLRRIEIANRLRLSEKQVKIWFQNRRVKQKK------------------GGSESPTF 292
            |..|.||:|.||:||||.|:|::.||||||||||:||||                  .|||:...
  Rat   248 FHFNKYLTRARRMEIANCLQLNDTQVKIWFQNRRMKQKKREREGLLATAASVASLQLPGSETSPI 312

  Fly   293 NLSTNSNGSPQASPVS 308
            ....|.....||...|
  Rat   313 KSGRNLGSPSQAQEPS 328

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
ind	NP_996087.2	Homeobox	231..283	CDD:278475	33/51 (65%)
Hoxd1	NP_001099354.1	COG5576	<208..325	CDD:227863	49/135 (36%)
		Homeobox	233..285	CDD:278475	33/51 (65%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E2759_KOG0489
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
	3	2.810