Protein Alignment ind and Msx2

DIOPT Version :10

• Sequence 1: NP_996087.2
• Gene: ind / 2768974
• FlyBaseID: FBgn0025776
• Length: 320
• Species: Drosophila melanogaster
• Sequence 2: NP_037114.2
• Gene: Msx2 / 25483
• RGDID: 3116
• Length: 267
• Species: Rattus norvegicus
• Alignment Length: 270
• Identity: 65/270 - (24%)
• Similarity: 98/270 - (36%)
• Gaps: 100/270 - (37%)

  Fly    24 LGSPGGSPTAAAAVAAAAMLPSIPMLPYPASYVGSYLFSLGIQQQQQQQQQQQQHAAAAAAAAAA 88
            |..||..|..|...|....: .:..||:            .::.....::..::..|.....|:|
  Rat    21 LAGPGPGPGGAEGGAEERRV-KVSSLPF------------SVEALMSDKKPPKESPAVPPDCASA 72

  Fly    89 AAALQ---------QHPHVSSSPGSLYHPYAQLFASKRKSSGFSNYEGCYPSPPLSANPNSQQLP 144
            .|.|:         :..|   |||.|..|:..  ||.:                   :.||:.
  Rat    73 GAVLRPLLLPGHGVRDAH---SPGPLVKPFET--ASVK-------------------SENSED-- 111

  Fly   145 PIHNLYGSPVVGGLPLPEPGSFCTSPSASSSASLDYTNNFDEPQGKRFKHESSCSPNSSPLKNHS 209
                  |:|.:     .|||.:...|                      :|   .||.:..|:.|.
  Rat   112 ------GAPWI-----QEPGRYSPPP----------------------RH---MSPTTCTLRKHK 140

  Fly   210 SGGPVEITPLINDYADSSKRIRTAFTSTQLLELEREFSHNAYLSRLRRIEIANRLRLSEKQVKIW 274
                            ::::.||.||::|||.|||:|....|||...|.|.::.|.|:|.|||||
  Rat   141 ----------------TNRKPRTPFTTSQLLALERKFRQKQYLSIAERAEFSSSLNLTETQVKIW 189

  Fly   275 FQNRRVKQKK 284
            |||||.|.|:
  Rat   190 FQNRRAKAKR 199

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
ind	NP_996087.2	Homeodomain	228..284	CDD:459649	30/55 (55%)
Msx2	NP_037114.2	Homeodomain	143..199	CDD:459649	30/55 (55%)