Protein Alignment ind and Hoxc8

DIOPT Version :9

• Sequence 1: NP_996087.2
• Gene: ind / 2768974
• FlyBaseID: FBgn0025776
• Length: 320
• Species: Drosophila melanogaster
• Sequence 2: NP_001170797.2
• Gene: Hoxc8 / 24460
• RGDID: 2821
• Length: 242
• Species: Rattus norvegicus
• Alignment Length: 239
• Identity: 70/239 - (29%)
• Similarity: 100/239 - (41%)
• Gaps: 59/239 - (24%)

  Fly    52 PASYVGSYLFSLGIQQQQQQQQQQQQHAAAAAAAAAAAAALQQHPHVSSSPGSLYHPYAQLFASK 116
            ||.|...:..|:|           :.||.......:|..    ..|.|......:|
  Rat    21 PAYYDCRFPQSVG-----------RSHALVYGPGGSAPG----FQHASHHVQDFFH--------- 61

  Fly   117 RKSSGFSNYEGCYPSP-PLSANPNSQ-----QLPPIHNLYGSPVVGGLPLPEPGSFCTSPSASSS 175
            ..:||.|| .|...:| .||.:.::.     :..|..:|||:        .:..|....|...||
  Rat    62 HGTSGISN-SGYQQNPCSLSCHGDASKFYGYEALPRQSLYGA--------QQEASVVQYPDCKSS 117

  Fly   176 ASLDYTNNFDEPQGKRFKHESSCSPNSSPLKNHSSGGPVEITPLINDYADSSKRIRTAFTSTQLL 240
            |:    .|..|.||       ..:.||||..         :.|.:..:|...:..|..::..|.|
  Rat   118 AN----TNSSEGQG-------HLNQNSSPSL---------MFPWMRPHAPGRRSGRQTYSRYQTL 162

  Fly   241 ELEREFSHNAYLSRLRRIEIANRLRLSEKQVKIWFQNRRVKQKK 284
            |||:||..|.||:|.||||:::.|.|:|:||||||||||:|.||
  Rat   163 ELEKEFLFNPYLTRKRRIEVSHALGLTERQVKIWFQNRRMKWKK 206

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
ind	NP_996087.2	Homeobox	231..283	CDD:278475	30/51 (59%)
Hoxc8	NP_001170797.2	Homeobox	153..206	CDD:395001	30/52 (58%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E2759_KOG0489
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
	2	1.900