Protein Alignment ind and lin-39

DIOPT Version :10

• Sequence 1: NP_996087.2
• Gene: ind / 2768974
• FlyBaseID: FBgn0025776
• Length: 320
• Species: Drosophila melanogaster
• Sequence 2: NP_001021164.1
• Gene: lin-39 / 176068
• WormBaseID: WBGene00003024
• Length: 253
• Species: Caenorhabditis elegans
• Alignment Length: 231
• Identity: 66/231 - (28%)
• Similarity: 110/231 - (47%)
• Gaps: 30/231 - (12%)

  Fly    69 QQQQQQQQQHAAAAAAAAAAAAALQQHPHVSSSPGSLYHPYAQLFASKRKSSGFSNYEGCYPSPP 133
            :.........:::::.::..|:.:.....:||:.|     |..:.||...|:.|.:|     ..|
 Worm    19 ESSSSSSSSSSSSSSTSSVGASGIPSSSELSSTIG-----YDPMTASAALSAHFGSY-----YDP 73

  Fly   134 LSANPNSQQLPPIHNLYGS--PVVGGLPLPEPGSFCTSPSASSS----ASLDYTNNFDEPQGKRF 192
            .|::..:........|.|.  |::|      ..|.|.:||.:|:    ..|:..::.|:...|:
 Worm    74 TSSSQIASYFASSQGLGGPQYPILG------DQSLCYNPSVTSTHHDWKHLEGDDDDDKDDDKK- 131

  Fly   193 KHESSCSPNSSPLKNHSSGGPVEITPLINDYADSS---KRIRTAFTSTQLLELEREFSHNAYLSR 254
                ..|.:...:..:|.|........::.....|   ||.|||:|..|:||||:||..:.||:|
 Worm   132 ----GISGDDDDMDKNSGGAVYPWMTRVHSTTGGSRGEKRQRTAYTRNQVLELEKEFHTHKYLTR 192

  Fly   255 LRRIEIANRLRLSEKQVKIWFQNRRVKQKKGGSESP 290
            .||||:|:.|.|:|:||||||||||:|.||...:.|
 Worm   193 KRRIEVAHSLMLTERQVKIWFQNRRMKHKKENKDKP 228

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
ind	NP_996087.2	Homeodomain	228..284	CDD:459649	35/55 (64%)
lin-39	NP_001021164.1	Homeodomain	166..222	CDD:459649	35/55 (64%)