DRSC/TRiP Functional Genomics Resources

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Protein Alignment ind and ceh-43

DIOPT Version :9

Sequence 1:NP_996087.2 Gene:ind / 2768974 FlyBaseID:FBgn0025776 Length:320 Species:Drosophila melanogaster
Sequence 2:NP_001338832.1 Gene:ceh-43 / 175581 WormBaseID:WBGene00000463 Length:282 Species:Caenorhabditis elegans


Alignment Length:221 Identity:64/221 - (28%)
Similarity:88/221 - (39%) Gaps:45/221 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   119 SSGFSNYEGCY-----PSPPLSANPNSQQLP--PIHNLYGSPVVGGLPLPEPGSFCTSPSASSSA 176
            |.||....|.|     .:||.|....|...|  |.|....|...|.    ..||...:|..:|:.
 Worm     4 SKGFEYVAGDYYQTSGVAPPTSNGAGSNVSPYFPYHAYPTSSTNGA----TGGSMYGTPQQTSAY 64

  Fly   177 SLDYTNNFDEPQGKRFKHESSCSPNSSP---LKNHSSGGPVE-ITPLINDYADSSKRIRTAFTST 237
            ::       .|.|          |.|||   ...|::...|| .....|......::.||.:.|:
 Worm    65 AM-------YPPG----------PGSSPEEAFPEHTTTKIVEGCEAKYNVKGKKMRKPRTIYNSS 112

  Fly   238 QLLELEREFSHNAYLSRLRRIEIANRLRLS---------EKQVKIWFQNRRVKQK--KGGSESPT 291
            ||..|:::|....||:...|..:|:.|.||         |.||||||||||.|||  ||||....
 Worm   113 QLQMLQKKFQKTQYLALPDRAALAHELGLSQTQRAQPITEFQVKIWFQNRRSKQKKQKGGSSDHA 177

  Fly   292 FNLSTN--SNGSPQASPVSPQVKVHE 315
            .:...:  ....|::.|:...|.:.|
 Worm   178 SDEEDDDTEESKPESPPMGESVMIQE 203

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
indNP_996087.2 Homeobox 231..283 CDD:278475 26/60 (43%)
ceh-43NP_001338832.1 Homeobox 105..168 CDD:365835 27/62 (44%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.910

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